Transcript: Human NM_002274.4

Homo sapiens keratin 13 (KRT13), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
KRT13 (3860)
Length:
1688
CDS:
63..1325

Additional Resources:

NCBI RefSeq record:
NM_002274.4
NBCI Gene record:
KRT13 (3860)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002274.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414223 TGATGTCCGTAGGCCTTAAAT pLKO_005 1395 3UTR 100% 15.000 21.000 N KRT13 n/a
2 TRCN0000061908 GCTGGTGGCTTTGTTGACTTT pLKO.1 318 CDS 100% 4.950 3.465 N KRT13 n/a
3 TRCN0000061910 GTGGTGTCTCTACCTGTTCAA pLKO.1 142 CDS 100% 4.950 3.465 N KRT13 n/a
4 TRCN0000061909 CCCTACTACAAGACCATTGAA pLKO.1 522 CDS 100% 5.625 3.375 N KRT13 n/a
5 TRCN0000061912 GTCATCCTGGAGATTGACAAT pLKO.1 588 CDS 100% 4.950 2.970 N KRT13 n/a
6 TRCN0000061911 GCCTACATGAAGAAGAACCAT pLKO.1 771 CDS 100% 3.000 1.500 Y KRT13 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002274.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06506 pDONR223 100% 91.4% 90.3% None (many diffs) n/a
2 ccsbBroad304_06506 pLX_304 0% 91.4% 90.3% V5 (many diffs) n/a
3 TRCN0000476017 TTGGATAGGGACAAACGGTCAACG pLX_317 28.8% 91.4% 90.3% V5 (many diffs) n/a
Download CSV