Transcript: Human NM_002608.4

Homo sapiens platelet derived growth factor subunit B (PDGFB), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
PDGFB (5155)
Length:
3728
CDS:
1020..1745

Additional Resources:

NCBI RefSeq record:
NM_002608.4
NBCI Gene record:
PDGFB (5155)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002608.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000039574 CGGAAATTCAAGCACACGCAT pLKO.1 1689 CDS 100% 2.640 3.696 N PDGFB n/a
2 TRCN0000010411 CCGAGTTGGACCTGAACATGA pLKO.1 1192 CDS 100% 4.950 3.465 N PDGFB n/a
3 TRCN0000310109 CCGAGTTGGACCTGAACATGA pLKO_005 1192 CDS 100% 4.950 3.465 N PDGFB n/a
4 TRCN0000039576 CCAGGTGAGAAAGATCGAGAT pLKO.1 1472 CDS 100% 4.050 2.835 N PDGFB n/a
5 TRCN0000298818 CCAGGTGAGAAAGATCGAGAT pLKO_005 1472 CDS 100% 4.050 2.835 N PDGFB n/a
6 TRCN0000039573 GCAGGGTTATTTAATATGGTA pLKO.1 1770 3UTR 100% 3.000 2.100 N PDGFB n/a
7 TRCN0000039577 CGAGGAGCTTTATGAGATGCT pLKO.1 1097 CDS 100% 2.640 1.848 N PDGFB n/a
8 TRCN0000298819 CGAGGAGCTTTATGAGATGCT pLKO_005 1097 CDS 100% 2.640 1.848 N PDGFB n/a
9 TRCN0000039575 CGCTCCTTTGATGATCTCCAA pLKO.1 1134 CDS 100% 2.640 1.848 N PDGFB n/a
10 TRCN0000310324 CGCTCCTTTGATGATCTCCAA pLKO_005 1134 CDS 100% 2.640 1.848 N PDGFB n/a
11 TRCN0000010412 TGACAAGACGGCACTGAAGGA pLKO.1 1709 CDS 100% 2.640 1.848 N PDGFB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002608.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01162 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01162 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467598 CACACCATAGTACTACCGGCTATC pLX_317 57.4% 100% 100% V5 n/a
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