Transcript: Human NM_002817.4

Homo sapiens proteasome 26S subunit, non-ATPase 13 (PSMD13), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
PSMD13 (5719)
Length:
1589
CDS:
75..1205

Additional Resources:

NCBI RefSeq record:
NM_002817.4
NBCI Gene record:
PSMD13 (5719)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002817.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330217 CAGACGGTCGACATTGAATTT pLKO_005 1280 3UTR 100% 13.200 18.480 N PSMD13 n/a
2 TRCN0000330284 GACACTTCAGGTGCTTGATTT pLKO_005 185 CDS 100% 13.200 10.560 N PSMD13 n/a
3 TRCN0000330282 CTATGATCTCTCCAGTAAATA pLKO_005 539 CDS 100% 15.000 10.500 N PSMD13 n/a
4 TRCN0000058110 CAGGTTACAAAGGAAACAATT pLKO.1 459 CDS 100% 13.200 9.240 N PSMD13 n/a
5 TRCN0000058109 CCCAAGGAGATGGTCTCATTA pLKO.1 226 CDS 100% 13.200 9.240 N PSMD13 n/a
6 TRCN0000330283 AGATGGTCTCATTAAGCTTTA pLKO_005 233 CDS 100% 10.800 7.560 N PSMD13 n/a
7 TRCN0000330215 CCCTTTGTCCCTCGTGGAAAT pLKO_005 290 CDS 100% 10.800 7.560 N PSMD13 n/a
8 TRCN0000058108 GCAGCCTGATTTAGCAGCTAA pLKO.1 845 CDS 100% 4.950 3.465 N PSMD13 n/a
9 TRCN0000058112 TGGCTGATTGACACCCTCTAT pLKO.1 768 CDS 100% 4.950 3.465 N PSMD13 n/a
10 TRCN0000066022 GTTTCTATGATCTCTCCAGTA pLKO.1 535 CDS 100% 4.050 2.430 N Psmd13 n/a
11 TRCN0000349530 GTTTCTATGATCTCTCCAGTA pLKO_005 535 CDS 100% 4.050 2.430 N Psmd13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002817.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06808 pDONR223 100% 99.6% 99.7% None (many diffs) n/a
2 ccsbBroad304_06808 pLX_304 0% 99.6% 99.7% V5 (many diffs) n/a
3 TRCN0000469537 ATTGGACTTTTTTGATTCCCAGAG pLX_317 36.9% 99.6% 99.7% V5 (many diffs) n/a
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