Transcript: Human NM_003104.6

Homo sapiens sorbitol dehydrogenase (SORD), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
SORD (6652)
Length:
4818
CDS:
90..1163

Additional Resources:

NCBI RefSeq record:
NM_003104.6
NBCI Gene record:
SORD (6652)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003104.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000028052 GCCAATCGGGATGGTCACTTT pLKO.1 635 CDS 100% 4.950 3.960 N SORD n/a
2 TRCN0000292463 GCCAATCGGGATGGTCACTTT pLKO_005 635 CDS 100% 4.950 3.960 N SORD n/a
3 TRCN0000028100 GCGCCTGGAGAACTATCCTAT pLKO.1 149 CDS 100% 4.950 3.465 N SORD n/a
4 TRCN0000028106 CGTCCAAGTCTGTGAATGTAA pLKO.1 1024 CDS 100% 5.625 2.813 Y SORD n/a
5 TRCN0000292388 CGTCCAAGTCTGTGAATGTAA pLKO_005 1024 CDS 100% 5.625 2.813 Y SORD n/a
6 TRCN0000221398 GCTCAAGTAGTGGTGACTGAT pLKO.1 681 CDS 100% 4.950 2.475 Y SORDL n/a
7 TRCN0000028069 GAGAACTATCCTATCCCTGAA pLKO.1 156 CDS 100% 4.050 2.025 Y SORD n/a
8 TRCN0000292389 GAGAACTATCCTATCCCTGAA pLKO_005 156 CDS 100% 4.050 2.025 Y SORD n/a
9 TRCN0000028082 GCCGATACAATCTGTCACCTT pLKO.1 415 CDS 100% 2.640 1.320 Y SORD n/a
10 TRCN0000292390 GCCGATACAATCTGTCACCTT pLKO_005 415 CDS 100% 2.640 1.320 Y SORD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003104.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06985 pDONR223 100% 99.9% 99.7% None 806A>C n/a
2 ccsbBroad304_06985 pLX_304 0% 99.9% 99.7% V5 806A>C n/a
3 TRCN0000468155 TTTTCCTCTAAATTGCCGAATAAT pLX_317 18.4% 99.9% 99.7% V5 806A>C n/a
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