Transcript: Human NM_004164.3

Homo sapiens retinol binding protein 2 (RBP2), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
RBP2 (5948)
Length:
694
CDS:
58..462

Additional Resources:

NCBI RefSeq record:
NM_004164.3
NBCI Gene record:
RBP2 (5948)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_004164.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359211 CTCACTCAGACGAAGGTTATT pLKO_005 166 CDS 100% 13.200 18.480 N RBP2 n/a
2 TRCN0000359145 CTAGCACATTCCGCAACTATG pLKO_005 221 CDS 100% 10.800 15.120 N RBP2 n/a
3 TRCN0000060001 TCTCACTCAGACGAAGGTTAT pLKO.1 165 CDS 100% 10.800 15.120 N RBP2 n/a
4 TRCN0000359147 ACATGAAGGCCCTGGATATTG pLKO_005 116 CDS 100% 13.200 9.240 N RBP2 n/a
5 TRCN0000359146 CCTGGATAACCGGCATGTTAA pLKO_005 288 CDS 100% 13.200 9.240 N RBP2 n/a
6 TRCN0000060002 CTACATGAAGGCCCTGGATAT pLKO.1 114 CDS 100% 10.800 7.560 N RBP2 n/a
7 TRCN0000059998 GTACACAAAGAGCCTGGATAA pLKO.1 276 CDS 100% 10.800 7.560 N RBP2 n/a
8 TRCN0000060000 GTGTGCCGTCAAGTGTTCAAA pLKO.1 433 CDS 100% 5.625 3.938 N RBP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_004164.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06850 pDONR223 100% 99.5% 100% None 6A>G;402A>G n/a
2 ccsbBroad304_06850 pLX_304 0% 99.5% 100% V5 6A>G;402A>G n/a
3 TRCN0000467825 ACCAGCCCAGTACCGGTAATTGCC pLX_317 92.1% 99.5% 100% V5 6A>G;402A>G n/a
4 ccsbBroadEn_15564 pDONR223 0% 99.2% 99.2% None 6A>G;341A>G;402A>G n/a
5 ccsbBroad304_15564 pLX_304 0% 99.2% 99.2% V5 6A>G;341A>G;402A>G n/a
6 TRCN0000470609 CTTGTTATCACCAGATCTTTCTTC pLX_317 92.1% 99.2% 99.2% V5 6A>G;341A>G;402A>G n/a
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