Transcript: Human NM_006743.5

Homo sapiens RNA binding motif protein 3 (RBM3), mRNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Homo sapiens (human)
Gene:
RBM3 (5935)
Length:
4298
CDS:
104..577

Additional Resources:

NCBI RefSeq record:
NM_006743.5
NBCI Gene record:
RBM3 (5935)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006743.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000102443 CCGCTACTCAGGAGGAAATTA pLKO.1 535 CDS 100% 15.000 21.000 N Rbm3 n/a
2 TRCN0000273461 CCGCTACTCAGGAGGAAATTA pLKO_005 535 CDS 100% 15.000 21.000 N RBM3 n/a
3 TRCN0000287876 CCGCTACTCAGGAGGAAATTA pLKO_005 535 CDS 100% 15.000 21.000 N Rbm3 n/a
4 TRCN0000273464 GACGTTCCAGAGACTATAATG pLKO_005 492 CDS 100% 13.200 18.480 N RBM3 n/a
5 TRCN0000001251 GCAGGTATTATGACAGTCGAC pLKO.1 447 CDS 100% 2.160 3.024 N RBM3 n/a
6 TRCN0000001250 TGGTCGTCAGATCCGTGTGGA pLKO.1 322 CDS 100% 0.880 1.232 N RBM3 n/a
7 TRCN0000001248 CCCAATGTACCTATAAGAAAT pLKO.1 988 3UTR 100% 13.200 9.240 N RBM3 n/a
8 TRCN0000273463 CCCAATGTACCTATAAGAAAT pLKO_005 988 3UTR 100% 13.200 9.240 N RBM3 n/a
9 TRCN0000001252 TCACCAACCCAGAGCATGCTT pLKO.1 264 CDS 100% 3.000 2.100 N RBM3 n/a
10 TRCN0000273465 TCACCAACCCAGAGCATGCTT pLKO_005 264 CDS 100% 3.000 2.100 N RBM3 n/a
11 TRCN0000001249 AGTGGCAGGTATTATGACAGT pLKO.1 443 CDS 100% 2.640 1.848 N RBM3 n/a
12 TRCN0000273462 GAAATGAGACATGCACATAAT pLKO_005 576 CDS 100% 13.200 7.920 N RBM3 n/a
13 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 3750 3UTR 100% 4.950 2.475 Y LOC387873 n/a
14 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 1022 3UTR 100% 13.200 6.600 Y IQCC n/a
15 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 1612 3UTR 100% 10.800 5.400 Y SMIM11A n/a
16 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3787 3UTR 100% 5.625 2.813 Y KLHL30 n/a
17 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3787 3UTR 100% 5.625 2.813 Y EID2B n/a
18 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 1121 3UTR 100% 4.950 2.475 Y DCAF11 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006743.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01381 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01381 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468099 CTCTGACTTTCCCACCGTGGAATT pLX_317 54.9% 100% 100% V5 n/a
Download CSV