Transcript: Mouse NM_007395.3

Mus musculus activin A receptor, type 1B (Acvr1b), mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Acvr1b (11479)
Length:
3277
CDS:
21..1538

Additional Resources:

NCBI RefSeq record:
NM_007395.3
NBCI Gene record:
Acvr1b (11479)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007395.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000022576 GTGACCATTGAGGGAATGATT pLKO.1 915 CDS 100% 5.625 7.875 N Acvr1b n/a
2 TRCN0000345100 GTGACCATTGAGGGAATGATT pLKO_005 915 CDS 100% 5.625 7.875 N Acvr1b n/a
3 TRCN0000022575 GAAGACTATCAACTGCCGTAT pLKO.1 1290 CDS 100% 4.050 5.670 N Acvr1b n/a
4 TRCN0000022578 GCAGGAAGATGTGAAGATTTA pLKO.1 1517 CDS 100% 13.200 9.240 N Acvr1b n/a
5 TRCN0000345030 GCAGGAAGATGTGAAGATTTA pLKO_005 1517 CDS 100% 13.200 9.240 N Acvr1b n/a
6 TRCN0000196291 GTCAGCATATCTTAGGTATAT pLKO.1 2881 3UTR 100% 13.200 9.240 N ACVR1B n/a
7 TRCN0000022577 GCTGCTATATTGACTTCTGCA pLKO.1 304 CDS 100% 2.640 1.848 N Acvr1b n/a
8 TRCN0000345027 GCTGCTATATTGACTTCTGCA pLKO_005 304 CDS 100% 2.640 1.848 N Acvr1b n/a
9 TRCN0000022574 GCTTTATTGCTGCTGACAATA pLKO.1 808 CDS 100% 1.320 0.792 N Acvr1b n/a
10 TRCN0000345028 GCTTTATTGCTGCTGACAATA pLKO_005 808 CDS 100% 1.320 0.792 N Acvr1b n/a
11 TRCN0000196765 GAATTGCTCATCGAGACTTAA pLKO.1 1009 CDS 100% 13.200 9.240 N ACVR1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007395.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00018 pDONR223 100% 90.8% 98.2% None (many diffs) n/a
2 ccsbBroad304_00018 pLX_304 34.5% 90.8% 98.2% V5 (many diffs) n/a
3 TRCN0000465737 GGCATCCGACAGGTTCTCTTAACC pLX_317 26% 90.8% 98.2% V5 (many diffs) n/a
4 ccsbBroadEn_14528 pDONR223 0% 90.8% 98.2% None (many diffs) n/a
5 ccsbBroad304_14528 pLX_304 26% 90.8% 98.2% V5 (many diffs) n/a
6 TRCN0000474947 CCGTTCGCCTTGATTCTTTCGACA pLX_317 24.5% 90.8% 98.2% V5 (many diffs) n/a
7 TRCN0000489615 TTGCACTTGCCTACGTGGGCGCCT pLX_317 22.2% 90.8% 98.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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