Transcript: Mouse NM_007506.6

Mus musculus ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) (Atp5g1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Atp5g1 (11951)
Length:
798
CDS:
77..487

Additional Resources:

NCBI RefSeq record:
NM_007506.6
NBCI Gene record:
Atp5g1 (11951)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007506.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000297025 GTGTTTGGTAGCTTGATTATT pLKO_005 341 CDS 100% 15.000 10.500 N Gm10039 n/a
2 TRCN0000075774 CAGCTCTGATTCGCTCCTGTA pLKO.1 108 CDS 100% 4.050 2.835 N Atp5g1 n/a
3 TRCN0000075773 GCTTGATTATTGGCTATGCCA pLKO.1 351 CDS 100% 0.750 0.525 N Atp5g1 n/a
4 TRCN0000318094 GCTTGATTATTGGCTATGCCA pLKO_005 351 CDS 100% 0.750 0.525 N Atp5g1 n/a
5 TRCN0000075775 GAATTCCAGACCAGTGTCATT pLKO.1 233 CDS 100% 0.000 0.000 N Atp5g1 n/a
6 TRCN0000318092 GAATTCCAGACCAGTGTCATT pLKO_005 233 CDS 100% 0.000 0.000 N Atp5g1 n/a
7 TRCN0000297024 ACACAGCAGCCAAGTTCATTG pLKO_005 267 CDS 100% 10.800 6.480 N Gm10039 n/a
8 TRCN0000297026 AGCTCTTCTCCTATGCCATTC pLKO_005 393 CDS 100% 6.000 3.600 N Gm10039 n/a
9 TRCN0000297086 AGTGTCATTTCCCGGGACATC pLKO_005 245 CDS 100% 4.050 2.430 N Gm10039 n/a
10 TRCN0000075777 CAGTGTCATTTCCCGGGACAT pLKO.1 244 CDS 100% 4.050 2.430 N Atp5g1 n/a
11 TRCN0000318093 CAGTGTCATTTCCCGGGACAT pLKO_005 244 CDS 100% 4.050 2.430 N Atp5g1 n/a
12 TRCN0000075776 CCATGGGACTCTTCTGTTTGA pLKO.1 435 CDS 100% 4.950 2.475 Y Atp5g1 n/a
13 TRCN0000318171 CCATGGGACTCTTCTGTTTGA pLKO_005 435 CDS 100% 4.950 2.475 Y Atp5g1 n/a
14 TRCN0000272114 GTCTAATCAGGCCTGTGTCTG pLKO_005 135 CDS 100% 4.050 2.025 Y Gm10039 n/a
15 TRCN0000418280 CATCCTCTTCGCCATGTGAAG pLKO_005 469 CDS 100% 4.050 2.025 Y Atp5g2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007506.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05870 pDONR223 100% 89.2% 89.7% None (many diffs) n/a
2 ccsbBroad304_05870 pLX_304 0% 89.2% 89.7% V5 (many diffs) n/a
3 TRCN0000473854 ACACGTATAGCGAAAGAGTCCCGC pLX_317 100% 89.2% 89.7% V5 (many diffs) n/a
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