Transcript: Mouse NM_009104.2

Mus musculus ribonucleotide reductase M2 (Rrm2), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Rrm2 (20135)
Length:
2199
CDS:
94..1266

Additional Resources:

NCBI RefSeq record:
NM_009104.2
NBCI Gene record:
Rrm2 (20135)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009104.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054781 GCGAGTGATGGCATAGTCAAT pLKO.1 502 CDS 100% 4.950 6.930 N Rrm2 n/a
2 TRCN0000302362 GCGAGTGATGGCATAGTCAAT pLKO_005 502 CDS 100% 4.950 6.930 N Rrm2 n/a
3 TRCN0000042400 CGTTGTCTTTCCCATCGAGTA pLKO.1 336 CDS 100% 4.050 5.670 N Rrm2 n/a
4 TRCN0000324722 CGTTGTCTTTCCCATCGAGTA pLKO_005 336 CDS 100% 4.050 5.670 N Rrm2 n/a
5 TRCN0000054782 GAGATAATCACCAACGCCGTT pLKO.1 967 CDS 100% 2.160 3.024 N Rrm2 n/a
6 TRCN0000302302 GAGATAATCACCAACGCCGTT pLKO_005 967 CDS 100% 2.160 3.024 N Rrm2 n/a
7 TRCN0000054780 CGAATTCGACAGAGAACTCTT pLKO.1 1223 CDS 100% 0.000 0.000 N Rrm2 n/a
8 TRCN0000042401 CTCCTTATTGACACTTACATT pLKO.1 628 CDS 100% 5.625 3.938 N Rrm2 n/a
9 TRCN0000054779 CCATGATATCTGGCAGATGTA pLKO.1 357 CDS 100% 4.950 3.465 N Rrm2 n/a
10 TRCN0000302301 CCATGATATCTGGCAGATGTA pLKO_005 357 CDS 100% 4.950 3.465 N Rrm2 n/a
11 TRCN0000042402 TCTCACTAGAAGGAAAGACAA pLKO.1 1154 CDS 100% 4.950 3.465 N Rrm2 n/a
12 TRCN0000324723 TCTCACTAGAAGGAAAGACAA pLKO_005 1154 CDS 100% 4.950 3.465 N Rrm2 n/a
13 TRCN0000042399 CGCTGTTTCTATGGCTTCCAA pLKO.1 571 CDS 100% 3.000 2.100 N Rrm2 n/a
14 TRCN0000054778 GCTCAGTATTATCTTGAAGTT pLKO.1 1768 3UTR 100% 4.950 2.970 N Rrm2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009104.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01466 pDONR223 100% 88% 91.2% None (many diffs) n/a
2 ccsbBroad304_01466 pLX_304 0% 88% 91.2% V5 (many diffs) n/a
3 TRCN0000466948 TTTAAAGCAATGTTTATTCGGAAC pLX_317 29.9% 88% 91.2% V5 (many diffs) n/a
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