Transcript: Mouse NM_009115.3

Mus musculus S100 protein, beta polypeptide, neural (S100b), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
S100b (20203)
Length:
1676
CDS:
132..410

Additional Resources:

NCBI RefSeq record:
NM_009115.3
NBCI Gene record:
S100b (20203)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009115.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072037 CAGAACTGAAGGAGCTTATCA pLKO.1 223 CDS 100% 5.625 4.500 N S100b n/a
2 TRCN0000072033 GCCTGCCATGAGTTCTTTGAA pLKO.1 381 CDS 100% 5.625 3.938 N S100b n/a
3 TRCN0000072034 CACAAGCTGAAGAAGTCAGAA pLKO.1 207 CDS 100% 4.950 3.465 N S100b n/a
4 TRCN0000072036 TGCCCTCATTGATGTCTTCCA pLKO.1 158 CDS 100% 2.640 1.848 N S100b n/a
5 TRCN0000072035 GAGCAGGAAGTGGTGGACAAA pLKO.1 279 CDS 100% 4.950 2.970 N S100b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009115.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06908 pDONR223 100% 85.1% 98.9% None (many diffs) n/a
2 ccsbBroad304_06908 pLX_304 0% 85.1% 98.9% V5 (many diffs) n/a
3 TRCN0000474683 ATAGTACAAGTCGTTACCACGCCC pLX_317 100% 85.1% 98.9% V5 (many diffs) n/a
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