Transcript: Mouse NM_011161.5

Mus musculus mitogen-activated protein kinase 11 (Mapk11), mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Mapk11 (19094)
Length:
2452
CDS:
94..1188

Additional Resources:

NCBI RefSeq record:
NM_011161.5
NBCI Gene record:
Mapk11 (19094)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011161.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000023246 CGACCTGAATAACATCGTCAA pLKO.1 426 CDS 100% 4.050 5.670 N Mapk11 n/a
2 TRCN0000023247 GATGAGGAGATGACCGGATAT pLKO.1 619 CDS 100% 10.800 8.640 N Mapk11 n/a
3 TRCN0000023244 GCATGTTCAATTCCTTGTCTA pLKO.1 468 CDS 100% 4.950 3.960 N Mapk11 n/a
4 TRCN0000322026 ATATGCCTCCCTCCCATTATG pLKO_005 1378 3UTR 100% 13.200 9.240 N Mapk11 n/a
5 TRCN0000420711 GCTGAGACCACCATCAGATTA pLKO_005 1687 3UTR 100% 13.200 9.240 N Mapk11 n/a
6 TRCN0000322027 GGCGCCAGAGATCATGCTAAA pLKO_005 660 CDS 100% 10.800 7.560 N Mapk11 n/a
7 TRCN0000322091 TGAAGCACGAGAACGTCATAG pLKO_005 326 CDS 100% 10.800 7.560 N Mapk11 n/a
8 TRCN0000416246 TGGATTGGGAGGAAGGCTAAT pLKO_005 1528 3UTR 100% 10.800 7.560 N Mapk11 n/a
9 TRCN0000023245 GAGCCCTATGATGAAAGTGTT pLKO.1 1054 CDS 100% 4.950 3.465 N Mapk11 n/a
10 TRCN0000381530 CCTGAAGCACGAGAACGTCAT pLKO_005 324 CDS 100% 4.050 2.835 N MAPK11 n/a
11 TRCN0000023248 GCACCCATGAAATTGAGCAGT pLKO.1 1166 CDS 100% 2.640 1.848 N Mapk11 n/a
12 TRCN0000322090 GCACCCATGAAATTGAGCAGT pLKO_005 1166 CDS 100% 2.640 1.848 N Mapk11 n/a
13 TRCN0000361439 GAGTGGAAGGAGCTTACTTAC pLKO_005 1099 CDS 100% 10.800 6.480 N Mapk11 n/a
14 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1317 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011161.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488294 ACCGGTTCTCTACCCCTTATTTTA pLX_317 26.8% 88.9% 97.2% V5 (many diffs) n/a
2 TRCN0000488248 TATTATCCCCACGTCTTGCTAGTC pLX_317 22.3% 88.9% 97.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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