Transcript: Mouse NM_011234.4

Mus musculus RAD51 recombinase (Rad51), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Rad51 (19361)
Length:
2138
CDS:
221..1240

Additional Resources:

NCBI RefSeq record:
NM_011234.4
NBCI Gene record:
Rad51 (19361)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011234.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000012660 CGGTCAGAGATCATACAGATA pLKO.1 506 CDS 100% 4.950 6.930 N Rad51 n/a
2 TRCN0000319742 CGGTCAGAGATCATACAGATA pLKO_005 506 CDS 100% 4.950 6.930 N Rad51 n/a
3 TRCN0000012658 CCTGTGATGCTATACGGCTTT pLKO.1 1258 3UTR 100% 4.050 5.670 N Rad51 n/a
4 TRCN0000350176 CCTGTGATGCTATACGGCTTT pLKO_005 1258 3UTR 100% 4.050 5.670 N Rad51 n/a
5 TRCN0000012659 GCCAATGATGTGAAGAAATTA pLKO.1 323 CDS 100% 15.000 10.500 N Rad51 n/a
6 TRCN0000329688 TTAGAGCAGTGTGGCATAAAT pLKO_005 302 CDS 100% 15.000 10.500 N RAD51 n/a
7 TRCN0000012662 CCACAGCCTATTTCACGGTTA pLKO.1 284 CDS 100% 4.050 2.835 N Rad51 n/a
8 TRCN0000319679 CCACAGCCTATTTCACGGTTA pLKO_005 284 CDS 100% 4.050 2.835 N Rad51 n/a
9 TRCN0000012661 GCTGAAGCTATGTTTGCCATT pLKO.1 1187 CDS 100% 4.050 2.835 N Rad51 n/a
10 TRCN0000319743 GCTGAAGCTATGTTTGCCATT pLKO_005 1187 CDS 100% 4.050 2.835 N Rad51 n/a
11 TRCN0000018879 CGGTCAGAGATCATACAGATT pLKO.1 506 CDS 100% 4.950 3.960 N RAD51 n/a
12 TRCN0000329686 CGGTCAGAGATCATACAGATT pLKO_005 506 CDS 100% 4.950 3.960 N RAD51 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011234.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11086 pDONR223 100% 65% 70.5% None (many diffs) n/a
2 ccsbBroad304_11086 pLX_304 0% 65% 70.5% V5 (many diffs) n/a
3 TRCN0000475891 GTATCTATCATTCAAGGGACCTAG pLX_317 49.3% 65% 70.5% V5 (many diffs) n/a
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