Transcript: Mouse NM_011252.4

Mus musculus RNA binding motif protein, X chromosome (Rbmx), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Rbmx (19655)
Length:
2437
CDS:
209..1384

Additional Resources:

NCBI RefSeq record:
NM_011252.4
NBCI Gene record:
Rbmx (19655)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011252.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000104044 CGAGAAACGAATAAGTCAAGA pLKO.1 335 CDS 100% 4.950 3.960 N Rbmx n/a
2 TRCN0000104043 CTATAGTGATAGAGATGGCTA pLKO.1 985 CDS 100% 2.640 2.112 N Rbmx n/a
3 TRCN0000417348 ACTTGTTCCTAGTGTTGTAAT pLKO_005 1624 3UTR 100% 13.200 9.240 N Rbmx n/a
4 TRCN0000434600 AGCAGCTCACGTGACGGATAT pLKO_005 1148 CDS 100% 10.800 7.560 N Rbmx n/a
5 TRCN0000438339 TTGGTTGGGTGTGCTACTTTC pLKO_005 1817 3UTR 100% 10.800 7.560 N Rbmx n/a
6 TRCN0000034712 CCACCAAACCATCATTTGAAA pLKO.1 459 CDS 100% 5.625 3.938 N RBMXL1 n/a
7 TRCN0000104041 CCACTAAAGACAGCTATTCAA pLKO.1 852 CDS 100% 5.625 3.938 N Rbmx n/a
8 TRCN0000104042 CTTGAGGCAGTGTTTGGCAAA pLKO.1 278 CDS 100% 4.050 2.835 N Rbmx n/a
9 TRCN0000413004 CTTTATTGGTGGGCTTAATAC pLKO_005 238 CDS 100% 13.200 7.920 N Rbmx n/a
10 TRCN0000104040 CCCAAGATCATCCACAAACTT pLKO.1 1716 3UTR 100% 5.625 3.375 N Rbmx n/a
11 TRCN0000034709 GCCGAAGTGATCTCTACTCAA pLKO.1 1197 CDS 100% 4.950 2.970 N RBMXL1 n/a
12 TRCN0000313999 AGATTATACTTACCGTGATTA pLKO_005 925 CDS 100% 13.200 6.600 Y Rbmxl1 n/a
13 TRCN0000034711 TGACTATCCATCAAGAGGCTA pLKO.1 967 CDS 100% 2.640 1.320 Y RBMXL1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011252.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03028 pDONR223 100% 93.3% 98.7% None (many diffs) n/a
2 ccsbBroad304_03028 pLX_304 0% 93.3% 98.7% V5 (many diffs) n/a
3 TRCN0000465341 TGGATACTAGCATGCCCCTATGTG pLX_317 32.8% 93.3% 98.7% V5 (many diffs) n/a
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