Transcript: Mouse NM_011955.2

Mus musculus nucleotide binding protein 1 (Nubp1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Nubp1 (26425)
Length:
2139
CDS:
40..1002

Additional Resources:

NCBI RefSeq record:
NM_011955.2
NBCI Gene record:
Nubp1 (26425)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000200145 CCAGTGTACGTGGATGACAAT pLKO.1 394 CDS 100% 4.950 3.960 N Nubp1 n/a
2 TRCN0000176470 CAGGATTTGAAGTCACTCATT pLKO.1 1109 3UTR 100% 4.950 3.465 N Nubp1 n/a
3 TRCN0000292618 CAGGATTTGAAGTCACTCATT pLKO_005 1109 3UTR 100% 4.950 3.465 N Nubp1 n/a
4 TRCN0000182112 CGTGGAGGAAATCAGAGAGAA pLKO.1 165 CDS 100% 4.950 3.465 N Nubp1 n/a
5 TRCN0000298012 CGTGGAGGAAATCAGAGAGAA pLKO_005 165 CDS 100% 4.950 3.465 N Nubp1 n/a
6 TRCN0000200443 GATGAAGACGGTGAGACACAA pLKO.1 186 CDS 100% 4.950 3.465 N Nubp1 n/a
7 TRCN0000182228 CAGGATCTGAGGATTCCACTT pLKO.1 808 CDS 100% 4.050 2.835 N Nubp1 n/a
8 TRCN0000292559 CAGGATCTGAGGATTCCACTT pLKO_005 808 CDS 100% 4.050 2.835 N Nubp1 n/a
9 TRCN0000176686 CAGAAGTATAATTCAGAGGAT pLKO.1 927 CDS 100% 2.640 1.848 N Nubp1 n/a
10 TRCN0000182692 GAGGATGGAGATACACAGGTT pLKO.1 280 CDS 100% 2.640 1.848 N Nubp1 n/a
11 TRCN0000292558 GAGGATGGAGATACACAGGTT pLKO_005 280 CDS 100% 2.640 1.848 N Nubp1 n/a
12 TRCN0000200178 CCCAAGATCATGGGCTTAGAA pLKO.1 337 CDS 100% 5.625 3.375 N Nubp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10988 pDONR223 100% 82.5% 85.6% None (many diffs) n/a
2 ccsbBroad304_10988 pLX_304 0% 82.5% 85.6% V5 (many diffs) n/a
3 TRCN0000477882 AGACTGTTTACCAAGGGGTCAGGT pLX_317 23.5% 82.5% 85.6% V5 (many diffs) n/a
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