Transcript: Mouse NM_013471.2

Mus musculus annexin A4 (Anxa4), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Anxa4 (11746)
Length:
2003
CDS:
120..1079

Additional Resources:

NCBI RefSeq record:
NM_013471.2
NBCI Gene record:
Anxa4 (11746)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013471.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110708 CGGAATCTTAGCCTACAGAAA pLKO.1 233 CDS 100% 4.950 6.930 N Anxa4 n/a
2 TRCN0000324399 CGGAATCTTAGCCTACAGAAA pLKO_005 233 CDS 100% 4.950 6.930 N Anxa4 n/a
3 TRCN0000110709 CGGGAAGTCTTTGTACTCTTT pLKO.1 992 CDS 100% 4.950 6.930 N Anxa4 n/a
4 TRCN0000324468 CGGGAAGTCTTTGTACTCTTT pLKO_005 992 CDS 100% 4.950 6.930 N Anxa4 n/a
5 TRCN0000110705 CCACGTCTTTATCAGATTATT pLKO.1 1325 3UTR 100% 15.000 12.000 N Anxa4 n/a
6 TRCN0000324470 CCACGTCTTTATCAGATTATT pLKO_005 1325 3UTR 100% 15.000 12.000 N Anxa4 n/a
7 TRCN0000110707 GCGGAGTAAACCTTCATATTT pLKO.1 848 CDS 100% 15.000 12.000 N Anxa4 n/a
8 TRCN0000324466 GCGGAGTAAACCTTCATATTT pLKO_005 848 CDS 100% 15.000 12.000 N Anxa4 n/a
9 TRCN0000110706 CCGTCGAATCAACCAGACATA pLKO.1 482 CDS 100% 4.950 3.465 N Anxa4 n/a
10 TRCN0000324467 CCGTCGAATCAACCAGACATA pLKO_005 482 CDS 100% 4.950 3.465 N Anxa4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013471.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00069 pDONR223 100% 85.9% 91.5% None (many diffs) n/a
2 ccsbBroad304_00069 pLX_304 0% 85.9% 91.5% V5 (many diffs) n/a
3 TRCN0000473823 TCTACCTAGATTGAAATAGACTAA pLX_317 51.1% 85.9% 91.5% V5 (many diffs) n/a
4 ccsbBroadEn_10679 pDONR223 100% 79.9% 85.3% None (many diffs) n/a
5 ccsbBroad304_10679 pLX_304 0% 79.9% 85.3% V5 (many diffs) n/a
6 TRCN0000466123 CATAATTGTGCCATGTGGCCTGCG pLX_317 46.3% 79.9% 85.3% V5 (many diffs) n/a
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