Transcript: Human NM_014478.5

Homo sapiens CGRP receptor component (CRCP), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
CRCP (27297)
Length:
2774
CDS:
117..563

Additional Resources:

NCBI RefSeq record:
NM_014478.5
NBCI Gene record:
CRCP (27297)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014478.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000061414 CTCAGTAACTACGAGGTATTT pLKO.1 147 CDS 100% 13.200 18.480 N CRCP n/a
2 TRCN0000304008 TGGTGGGCCATGTCCTAATTA pLKO_005 897 3UTR 100% 15.000 12.000 N CRCP n/a
3 TRCN0000304007 TATCACCTATGAAACGTTAAA pLKO_005 248 CDS 100% 13.200 9.240 N CRCP n/a
4 TRCN0000304009 CGAAGAGGACCCAGCATAGAA pLKO_005 545 CDS 100% 5.625 3.938 N CRCP n/a
5 TRCN0000061417 CAGTTACTAACTGATCTGAAA pLKO.1 168 CDS 100% 4.950 3.465 N CRCP n/a
6 TRCN0000061413 GCAGCGTAAAGAAAGTGGAAA pLKO.1 191 CDS 100% 4.950 3.465 N CRCP n/a
7 TRCN0000300560 GCAGCGTAAAGAAAGTGGAAA pLKO_005 191 CDS 100% 4.950 3.465 N CRCP n/a
8 TRCN0000061416 GAAGAAGAATACAAACAGCAA pLKO.1 512 CDS 100% 2.640 1.848 N CRCP n/a
9 TRCN0000304072 AGGCACCAGAGTCCTGAAATT pLKO_005 291 CDS 100% 13.200 7.920 N CRCP n/a
10 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 2004 3UTR 100% 4.950 2.475 Y CFLAR n/a
11 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 2004 3UTR 100% 4.950 2.475 Y C19orf31 n/a
12 TRCN0000061415 CAGAGAATTTCTCACAGCATT pLKO.1 314 CDS 100% 4.950 2.475 Y CRCP n/a
13 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 2002 3UTR 100% 4.950 2.475 Y ERN2 n/a
14 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 2002 3UTR 100% 4.950 2.475 Y P3H4 n/a
15 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 2002 3UTR 100% 4.950 2.475 Y P3H4 n/a
16 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 1549 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014478.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000488724 AAGTTCTTCTTGTCAAACGAACTG pLX_317 82% 100% 100% V5 n/a
2 ccsbBroadEn_03023 pDONR223 100% 77.7% 77.7% None 46_144del n/a
3 ccsbBroad304_03023 pLX_304 0% 77.7% 77.7% V5 46_144del n/a
4 TRCN0000466312 GGGAGGACGGGTCATTGCGTAGCG pLX_317 60% 77.7% 77.7% V5 46_144del n/a
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