Transcript: Mouse NM_015786.3

Mus musculus histone cluster 1, H1c (Hist1h1c), mRNA.

Source:
NCBI, updated 2017-04-23
Taxon:
Mus musculus (mouse)
Gene:
Hist1h1c (50708)
Length:
725
CDS:
43..681

Additional Resources:

NCBI RefSeq record:
NM_015786.3
NBCI Gene record:
Hist1h1c (50708)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_015786.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000093034 GAGCGCGTCTAAAGCCGTAAA pLKO.1 600 CDS 100% 10.800 15.120 N Hist1h1c n/a
2 TRCN0000305599 CAAAGAAGGCGAAGGTCACCA pLKO_005 563 CDS 100% 2.640 1.848 N Hist1h1c n/a
3 TRCN0000093037 CGTAAAGCCAAAGGCTGCCAA pLKO.1 615 CDS 100% 2.640 1.848 N Hist1h1c n/a
4 TRCN0000353730 CGTAAAGCCAAAGGCTGCCAA pLKO_005 615 CDS 100% 2.640 1.848 N Hist1h1c n/a
5 TRCN0000093036 TGTGACCAAGAAAGTGGCCAA pLKO.1 537 CDS 100% 2.160 1.512 N Hist1h1c n/a
6 TRCN0000374659 CAAGGGCATCCTGGTGCAAAC pLKO_005 309 CDS 100% 2.000 1.400 N Hist1h1c n/a
7 TRCN0000305550 CAAGAAGGTTGCAGCCAAGAA pLKO_005 654 CDS 100% 4.950 2.970 N Hist1h1c n/a
8 TRCN0000093035 CGGCTCCTTCAAACTCAACAA pLKO.1 348 CDS 100% 4.950 2.475 Y Hist1h1c n/a
9 TRCN0000106804 CTCCTTCAAACTCAACAAGAA pLKO.1 351 CDS 100% 4.950 2.475 Y H1-3 n/a
10 TRCN0000369850 GAAGAACAACAGCCGCATCAA pLKO_005 264 CDS 100% 4.950 2.475 Y H1-4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015786.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00714 pDONR223 100% 81.6% 88.2% None (many diffs) n/a
2 ccsbBroad304_00714 pLX_304 92.2% 81.6% 88.2% V5 (many diffs) n/a
3 TRCN0000470253 AAGGTCACGTGCCGCATGCTCGAC pLX_317 59.3% 81.6% 88.2% V5 (many diffs) n/a
4 ccsbBroadEn_00715 pDONR223 100% 79.4% 83.6% None (many diffs) n/a
5 TRCN0000467159 AGTATACGATAATTTCTCCAAAAA pLX_317 57.5% 79.4% 83.6% V5 (many diffs) n/a
6 ccsbBroad304_00715 pLX_304 76.1% 79.2% 83.1% V5 (many diffs) n/a
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