Transcript: Human NM_015980.5

Homo sapiens neuronal vesicle trafficking associated 2 (NSG2), mRNA.

Source:
NCBI, updated 2019-05-28
Taxon:
Homo sapiens (human)
Gene:
NSG2 (51617)
Length:
2350
CDS:
161..676

Additional Resources:

NCBI RefSeq record:
NM_015980.5
NBCI Gene record:
NSG2 (51617)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015980.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418744 GAGTTGTCTGAACCGATATTT pLKO_005 839 3UTR 100% 15.000 21.000 N NSG2 n/a
2 TRCN0000418136 ATCACTCCCTTGGAGGTTAAT pLKO_005 242 CDS 100% 13.200 18.480 N NSG2 n/a
3 TRCN0000430041 GCCCAGAGGGATTCGTCTATA pLKO_005 462 CDS 100% 13.200 18.480 N NSG2 n/a
4 TRCN0000151547 GTGAAGACAAGAACGGAATAT pLKO.1 296 CDS 100% 13.200 18.480 N NSG2 n/a
5 TRCN0000432896 AGACCGGGACTATTCCATTAG pLKO_005 1148 3UTR 100% 10.800 15.120 N NSG2 n/a
6 TRCN0000158345 CGCTGAATTTACGGTCACCAT pLKO.1 361 CDS 100% 2.640 3.696 N NSG2 n/a
7 TRCN0000153463 CGGAATAACAAGTTGTCCCTA pLKO.1 2201 3UTR 100% 2.640 3.696 N NSG2 n/a
8 TRCN0000153279 GCTGGGTAATAAGACTAGCAT pLKO.1 2078 3UTR 100% 3.000 2.400 N NSG2 n/a
9 TRCN0000104927 CCTGGTGGTTTACAAAGCCTT pLKO.1 424 CDS 100% 2.640 2.112 N Nsg2 n/a
10 TRCN0000434817 TTGTTCCCATGTAAGATATTT pLKO_005 930 3UTR 100% 15.000 10.500 N NSG2 n/a
11 TRCN0000158192 CATCGTGTTCCTGGTGGTTTA pLKO.1 415 CDS 100% 10.800 7.560 N NSG2 n/a
12 TRCN0000151162 GCCACTGCTTATTCTTTGTTA pLKO.1 956 3UTR 100% 5.625 3.938 N NSG2 n/a
13 TRCN0000151229 GTTTACAAAGCCTTCACCTAT pLKO.1 431 CDS 100% 4.950 3.465 N NSG2 n/a
14 TRCN0000158344 CGGAACAGAAGAACAAAGGGA pLKO.1 321 CDS 100% 0.750 0.525 N NSG2 n/a
15 TRCN0000104926 GCTGAATTTACGGTCACCATT pLKO.1 362 CDS 100% 4.950 6.930 N Nsg2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015980.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03346 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03346 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468822 TGCATGGTCTAAAATCCACGCGCG pLX_317 73.7% 100% 100% V5 n/a
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