Transcript: Human NM_016470.8

Homo sapiens oxidative stress responsive serine rich 1 (OSER1), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
OSER1 (51526)
Length:
2109
CDS:
118..996

Additional Resources:

NCBI RefSeq record:
NM_016470.8
NBCI Gene record:
OSER1 (51526)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_016470.8, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000276330 TGTAAGAGATGGCATGATATG pLKO_005 733 CDS 100% 10.800 15.120 N OSER1 n/a
2 TRCN0000128875 GAAGGCTTGTCAAAGAGATTT pLKO.1 1031 3UTR 100% 13.200 10.560 N OSER1 n/a
3 TRCN0000276371 GAAGGCTTGTCAAAGAGATTT pLKO_005 1031 3UTR 100% 13.200 10.560 N OSER1 n/a
4 TRCN0000130473 GCTTTAAACCAATGAAGGCTT pLKO.1 1018 3UTR 100% 2.640 2.112 N OSER1 n/a
5 TRCN0000276329 CCTGATAGCAAGAAGCTAATT pLKO_005 992 CDS 100% 13.200 9.240 N OSER1 n/a
6 TRCN0000276331 TCAGGCTACATGGAGTATTAC pLKO_005 925 CDS 100% 13.200 9.240 N OSER1 n/a
7 TRCN0000276328 CTCTGACTTTCAATCAGTTTC pLKO_005 663 CDS 100% 10.800 7.560 N OSER1 n/a
8 TRCN0000130244 CAGCCCAGAATATTAGAAGTT pLKO.1 1401 3UTR 100% 4.950 3.465 N OSER1 n/a
9 TRCN0000130568 CTCTACTTCTCTCGATGCTAA pLKO.1 519 CDS 100% 4.950 3.465 N OSER1 n/a
10 TRCN0000127716 GCAGTACAATAGCGTCTTCTT pLKO.1 401 CDS 100% 4.950 3.465 N OSER1 n/a
11 TRCN0000127845 GCAACAGATGATACCAAACCT pLKO.1 253 CDS 100% 3.000 2.100 N OSER1 n/a
12 TRCN0000128980 GCACTAAACATTTGTCATGCT pLKO.1 1372 3UTR 100% 2.640 1.848 N OSER1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016470.8, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03326 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03326 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000465748 CGGTTCTCTACCTAGACCACAACC pLX_317 43.4% 100% 100% V5 n/a
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