Transcript: Human NM_018190.3

Homo sapiens Bardet-Biedl syndrome 7 (BBS7), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
BBS7 (55212)
Length:
2625
CDS:
185..2203

Additional Resources:

NCBI RefSeq record:
NM_018190.3
NBCI Gene record:
BBS7 (55212)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018190.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000419904 ACGGAATGAGTTGGAACATTT pLKO_005 1219 CDS 100% 13.200 18.480 N BBS7 n/a
2 TRCN0000412928 ATGAATCAGTTGACAACAAAT pLKO_005 2324 3UTR 100% 13.200 18.480 N BBS7 n/a
3 TRCN0000249580 CAACATATCATACGAGATAAA pLKO_005 1957 CDS 100% 13.200 18.480 N Bbs7 n/a
4 TRCN0000412994 CAGTACCTTCCTTTGGTATAA pLKO_005 1308 CDS 100% 13.200 9.240 N BBS7 n/a
5 TRCN0000433048 GAAATCGTGGTGTCCACATAT pLKO_005 1094 CDS 100% 13.200 9.240 N BBS7 n/a
6 TRCN0000422639 GAACTCAAGATTCGCTCAATT pLKO_005 1547 CDS 100% 13.200 9.240 N BBS7 n/a
7 TRCN0000083779 GCAGCAGTGTTCAAGACTTTA pLKO.1 347 CDS 100% 13.200 9.240 N BBS7 n/a
8 TRCN0000083782 GCAGGAGAATGTGTGACATTT pLKO.1 1793 CDS 100% 13.200 9.240 N BBS7 n/a
9 TRCN0000413212 GGTACAGACTGCAATAGATAA pLKO_005 1381 CDS 100% 13.200 9.240 N BBS7 n/a
10 TRCN0000426290 TAGAATACCTTGCCATATTTC pLKO_005 2214 3UTR 100% 13.200 9.240 N BBS7 n/a
11 TRCN0000083778 CCCAAGGATCATGTAAGAGAA pLKO.1 2252 3UTR 100% 4.950 3.465 N BBS7 n/a
12 TRCN0000083780 CCTCAACATATCATACGAGAT pLKO.1 1954 CDS 100% 4.050 2.835 N BBS7 n/a
13 TRCN0000083781 CCCATGAATACACTGACCCTA pLKO.1 1697 CDS 100% 2.640 1.848 N BBS7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018190.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03550 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03550 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000477299 GCCAAGGCTCCATATTCCACAATG pLX_317 19.7% 100% 100% V5 n/a
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