Transcript: Mouse NM_018772.4

Mus musculus brain protein I3 (Bri3), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Bri3 (55950)
Length:
963
CDS:
154..531

Additional Resources:

NCBI RefSeq record:
NM_018772.4
NBCI Gene record:
Bri3 (55950)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_018772.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000348681 GGGTCTATAACATCCACAGTC pLKO_005 317 CDS 100% 4.050 5.670 N Bri3 n/a
2 TRCN0000313656 CCCGGGTCTATAACATCCACA pLKO_005 314 CDS 100% 2.640 3.696 N Bri3 n/a
3 TRCN0000124515 CGGGTCTATAACATCCACAGT pLKO.1 316 CDS 100% 2.640 3.696 N Bri3 n/a
4 TRCN0000124517 TCTATAACATCCACAGTCGAA pLKO.1 320 CDS 100% 2.640 3.696 N Bri3 n/a
5 TRCN0000375389 ACTTTGAGAATGGTGAGAAAT pLKO_005 736 3UTR 100% 13.200 9.240 N Bri3 n/a
6 TRCN0000124518 CCAACTGTGGAGCGGTCTTTA pLKO.1 506 CDS 100% 13.200 9.240 N Bri3 n/a
7 TRCN0000317308 CCAACTGTGGAGCGGTCTTTA pLKO_005 506 CDS 100% 13.200 9.240 N Bri3 n/a
8 TRCN0000124514 CATACCATTGTGTAGCTTGTT pLKO.1 779 3UTR 100% 4.950 3.465 N Bri3 n/a
9 TRCN0000348680 TTGCACTGAGGAAGCGAAGAT pLKO_005 482 CDS 100% 4.950 3.465 N Bri3 n/a
10 TRCN0000375390 GTATCCTGCCAACTCCATCGT pLKO_005 351 CDS 100% 2.640 1.848 N Bri3 n/a
11 TRCN0000349983 TTGGTGTCCTGGAGTACTGCT pLKO_005 401 CDS 100% 2.640 1.848 N Bri3 n/a
12 TRCN0000349984 GGGTAACGTGCTGCTTCTATT pLKO_005 702 3UTR 100% 13.200 7.920 N Bri3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018772.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07944 pDONR223 100% 89.3% 92.8% None (many diffs) n/a
2 ccsbBroad304_07944 pLX_304 0% 89.3% 92.8% V5 (many diffs) n/a
3 TRCN0000481485 TCGCATAATTGTACTGTGCAGGCG pLX_317 100% 89.3% 92.8% V5 (many diffs) n/a
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