Transcript: Human NM_018926.2

Homo sapiens protocadherin gamma subfamily B, 6 (PCDHGB6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
PCDHGB6 (56100)
Length:
4599
CDS:
1..2793

Additional Resources:

NCBI RefSeq record:
NM_018926.2
NBCI Gene record:
PCDHGB6 (56100)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018926.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435581 GAGATCTCATAGCTTGATATT pLKO_005 615 CDS 100% 13.200 18.480 N PCDHGB6 n/a
2 TRCN0000437989 ATCCGCTGGTACACGACTATC pLKO_005 438 CDS 100% 10.800 15.120 N PCDHGB6 n/a
3 TRCN0000056265 GCATTGCACATACGGGTACAA pLKO.1 2264 CDS 100% 4.950 6.930 N PCDHGB6 n/a
4 TRCN0000056266 GCAGAGACGAATATAGAATTA pLKO.1 728 CDS 100% 13.200 10.560 N PCDHGB6 n/a
5 TRCN0000415153 TAATTCCGATGGTGGCAAATA pLKO_005 552 CDS 100% 13.200 10.560 N PCDHGB6 n/a
6 TRCN0000056263 CGCCTCTTTCTTCCAGTAGAA pLKO.1 1289 CDS 100% 4.950 3.960 N PCDHGB6 n/a
7 TRCN0000056267 CCTACATTCCAATGAAGACAT pLKO.1 2316 CDS 100% 4.950 3.465 N PCDHGB6 n/a
8 TRCN0000056264 CCAGAGTTATCTCTGGAGAAA pLKO.1 574 CDS 100% 0.495 0.347 N PCDHGB6 n/a
9 TRCN0000053813 CCAGCCATAAACCAATAACTA pLKO.1 3694 3UTR 100% 5.625 2.813 Y PCDHGA2 n/a
10 TRCN0000203363 CCCAAGATCAATGCTCAAGTT pLKO.1 3339 3UTR 100% 4.950 2.475 Y PCDHGA7 n/a
11 TRCN0000094725 GCCCAGAAATAATCATCACTT pLKO.1 1031 CDS 100% 4.950 2.475 Y Pcdhgb7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018926.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01151 pDONR223 100% 14.1% 13.6% None (many diffs) n/a
2 ccsbBroad304_01151 pLX_304 0% 14.1% 13.6% V5 (many diffs) n/a
3 TRCN0000466539 CATGGTTCGGTAATGAAAGTTCCA pLX_317 36.4% 14.1% 13.6% V5 (many diffs) n/a
4 ccsbBroadEn_11019 pDONR223 100% 6.4% 6.4% None 1_2610del n/a
5 ccsbBroad304_11019 pLX_304 0% 6.4% 6.4% V5 1_2610del n/a
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