Construct: ORF ccsbBroadEn_11019
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012051.1_s300c1, BRDN0000389349
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCDHGC3 (5098)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 5098 | PCDHGC3 | protocadherin gamma subfami... | NM_032403.3 | 44.7% | 44.7% | 1_222del |
2 | human | 56105 | PCDHGA11 | protocadherin gamma subfami... | NM_032092.2 | 8% | 8% | 1_2070del |
3 | human | 8641 | PCDHGB4 | protocadherin gamma subfami... | NM_003736.3 | 6.5% | 6.5% | 1_2589del |
4 | human | 56101 | PCDHGB5 | protocadherin gamma subfami... | NM_018925.2 | 6.5% | 6.5% | 1_2589del |
5 | human | 56104 | PCDHGB1 | protocadherin gamma subfami... | NM_018922.2 | 6.4% | 6.4% | 1_2601del |
6 | human | 56102 | PCDHGB3 | protocadherin gamma subfami... | NM_018924.5 | 6.4% | 6.4% | 1_2607del |
7 | human | 56099 | PCDHGB7 | protocadherin gamma subfami... | NM_018927.4 | 6.4% | 6.4% | 1_2607del |
8 | human | 56100 | PCDHGB6 | protocadherin gamma subfami... | NM_018926.2 | 6.4% | 6.4% | 1_2610del |
9 | human | 56114 | PCDHGA1 | protocadherin gamma subfami... | NM_018912.2 | 6.4% | 6.4% | 1_2613del |
10 | human | 56110 | PCDHGA5 | protocadherin gamma subfami... | NM_018918.2 | 6.4% | 6.4% | 1_2613del |
11 | human | 56103 | PCDHGB2 | protocadherin gamma subfami... | NM_018923.2 | 6.4% | 6.4% | 1_2613del |
12 | human | 26025 | PCDHGA12 | protocadherin gamma subfami... | NM_003735.3 | 6.4% | 6.4% | 1_2616del |
13 | human | 56113 | PCDHGA2 | protocadherin gamma subfami... | NM_018915.4 | 6.4% | 6.4% | 1_2616del |
14 | human | 56112 | PCDHGA3 | protocadherin gamma subfami... | NM_018916.4 | 6.4% | 6.4% | 1_2616del |
15 | human | 56109 | PCDHGA6 | protocadherin gamma subfami... | NM_018919.3 | 6.4% | 6.4% | 1_2616del |
16 | human | 56108 | PCDHGA7 | protocadherin gamma subfami... | NM_018920.4 | 6.4% | 6.4% | 1_2616del |
17 | human | 56107 | PCDHGA9 | protocadherin gamma subfami... | NM_018921.2 | 6.4% | 6.4% | 1_2616del |
18 | human | 9708 | PCDHGA8 | protocadherin gamma subfami... | NM_032088.1 | 6.4% | 6.4% | 1_2616del |
19 | human | 5098 | PCDHGC3 | protocadherin gamma subfami... | NM_002588.4 | 6.4% | 6.4% | 1_2622del |
20 | human | 56105 | PCDHGA11 | protocadherin gamma subfami... | NM_018914.3 | 6.4% | 6.4% | 1_2625del |
21 | human | 56106 | PCDHGA10 | protocadherin gamma subfami... | NM_018913.2 | 6.4% | 6.4% | 1_2628del |
22 | human | 56098 | PCDHGC4 | protocadherin gamma subfami... | NM_018928.2 | 6.3% | 6.3% | 1_2634del |
23 | human | 56097 | PCDHGC5 | protocadherin gamma subfami... | NM_018929.3 | 6.3% | 6.3% | 1_2652del |
24 | human | 56111 | PCDHGA4 | protocadherin gamma subfami... | NM_018917.4 | 6.2% | 6.2% | 1_2706del |
25 | mouse | 93701 | Pcdhgb4 | protocadherin gamma subfami... | NM_033576.1 | 5.9% | 6.5% | (many diffs) |
26 | mouse | 103611159 | Gm38667 | predicted gene, 38667 | NM_001301259.1 | 5.8% | 6.5% | (many diffs) |
27 | mouse | 93699 | Pcdhgb1 | protocadherin gamma subfami... | NM_033574.3 | 5.8% | 6.5% | (many diffs) |
28 | mouse | 100384868 | Gm37013 | predicted gene, 37013 | NM_001174154.2 | 5.8% | 6.5% | (many diffs) |
29 | mouse | 93702 | Pcdhgb5 | protocadherin gamma subfami... | NM_033577.1 | 5.8% | 6.4% | (many diffs) |
30 | mouse | 103611158 | Gm38666 | predicted gene, 38666 | NM_001301256.1 | 5.8% | 6.4% | (many diffs) |
31 | mouse | 93700 | Pcdhgb2 | protocadherin gamma subfami... | NM_033575.3 | 5.8% | 6.4% | (many diffs) |
32 | mouse | 93711 | Pcdhga3 | protocadherin gamma subfami... | NM_033586.2 | 5.8% | 6.4% | (many diffs) |
33 | mouse | 93704 | Pcdhgb7 | protocadherin gamma subfami... | NM_033579.1 | 5.8% | 6.4% | (many diffs) |
34 | mouse | 93703 | Pcdhgb6 | protocadherin gamma subfami... | NM_033578.3 | 5.8% | 6.4% | (many diffs) |
35 | mouse | 93712 | Pcdhga4 | protocadherin gamma subfami... | NM_033587.3 | 5.8% | 6.4% | (many diffs) |
36 | mouse | 93722 | Pcdhga10 | protocadherin gamma subfami... | NM_033593.3 | 5.8% | 6.4% | (many diffs) |
37 | mouse | 93705 | Pcdhgb8 | protocadherin gamma subfami... | NM_033580.3 | 5.8% | 6.4% | (many diffs) |
38 | mouse | 93709 | Pcdhga1 | protocadherin gamma subfami... | NM_033584.1 | 5.8% | 6.4% | (many diffs) |
39 | mouse | 93710 | Pcdhga2 | protocadherin gamma subfami... | NM_033585.1 | 5.8% | 6.4% | (many diffs) |
40 | mouse | 93713 | Pcdhga5 | protocadherin gamma subfami... | NM_033588.4 | 5.7% | 6.4% | (many diffs) |
41 | mouse | 93714 | Pcdhga6 | protocadherin gamma subfami... | NM_033589.1 | 5.7% | 6.4% | (many diffs) |
42 | mouse | 93716 | Pcdhga8 | protocadherin gamma subfami... | NM_033591.3 | 5.7% | 6.4% | (many diffs) |
43 | mouse | 93717 | Pcdhga9 | protocadherin gamma subfami... | NM_033592.3 | 5.7% | 6.4% | (many diffs) |
44 | mouse | 93724 | Pcdhga12 | protocadherin gamma subfami... | NM_033595.4 | 5.7% | 6.4% | (many diffs) |
45 | mouse | 93723 | Pcdhga11 | protocadherin gamma subfami... | NM_033594.2 | 5.7% | 6.4% | (many diffs) |
46 | mouse | 93706 | Pcdhgc3 | protocadherin gamma subfami... | NM_033581.3 | 5.7% | 6.4% | (many diffs) |
47 | mouse | 93715 | Pcdhga7 | protocadherin gamma subfami... | NM_033590.3 | 5.7% | 6.4% | (many diffs) |
48 | mouse | 93707 | Pcdhgc4 | protocadherin gamma subfami... | NM_033582.2 | 5.7% | 6.3% | (many diffs) |
49 | mouse | 93708 | Pcdhgc5 | protocadherin gamma subfami... | NM_033583.3 | 5.7% | 6.3% | (many diffs) |
50 | mouse | 93705 | Pcdhgb8 | protocadherin gamma subfami... | NR_160734.1 | 5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 246
- ORF length:
- 180
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAANAAG 61 TTGGCATGGG ATTGAGCGCC CGCTACGGAC CCCAGTTCAC CCTGCAGCAC GTGCCCGACT 121 ACCGCCAGAA TGTCTACATC CCAGGCAGCA ATGCCACACT GACCAACGCA GCTGGCAAGC 181 GGGATGGCAA GGCCCCAGCA GGTGGCAATG GCAACAAGAA GAAGTCGGGC AAGAAGGAGA 241 AGAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 301 gttgcaacga ac