Construct: ORF ccsbBroadEn_11019

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012051.1_s300c1, BRDN0000389349
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDHGC3 (5098)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5098 PCDHGC3 protocadherin gamma subfami... NM_032403.3 44.7% 44.7% 1_222del
2 human 56105 PCDHGA11 protocadherin gamma subfami... NM_032092.2 8% 8% 1_2070del
3 human 8641 PCDHGB4 protocadherin gamma subfami... NM_003736.3 6.5% 6.5% 1_2589del
4 human 56101 PCDHGB5 protocadherin gamma subfami... NM_018925.2 6.5% 6.5% 1_2589del
5 human 56104 PCDHGB1 protocadherin gamma subfami... NM_018922.2 6.4% 6.4% 1_2601del
6 human 56102 PCDHGB3 protocadherin gamma subfami... NM_018924.5 6.4% 6.4% 1_2607del
7 human 56099 PCDHGB7 protocadherin gamma subfami... NM_018927.4 6.4% 6.4% 1_2607del
8 human 56100 PCDHGB6 protocadherin gamma subfami... NM_018926.2 6.4% 6.4% 1_2610del
9 human 56114 PCDHGA1 protocadherin gamma subfami... NM_018912.2 6.4% 6.4% 1_2613del
10 human 56110 PCDHGA5 protocadherin gamma subfami... NM_018918.2 6.4% 6.4% 1_2613del
11 human 56103 PCDHGB2 protocadherin gamma subfami... NM_018923.2 6.4% 6.4% 1_2613del
12 human 26025 PCDHGA12 protocadherin gamma subfami... NM_003735.3 6.4% 6.4% 1_2616del
13 human 56113 PCDHGA2 protocadherin gamma subfami... NM_018915.4 6.4% 6.4% 1_2616del
14 human 56112 PCDHGA3 protocadherin gamma subfami... NM_018916.4 6.4% 6.4% 1_2616del
15 human 56109 PCDHGA6 protocadherin gamma subfami... NM_018919.3 6.4% 6.4% 1_2616del
16 human 56108 PCDHGA7 protocadherin gamma subfami... NM_018920.4 6.4% 6.4% 1_2616del
17 human 56107 PCDHGA9 protocadherin gamma subfami... NM_018921.2 6.4% 6.4% 1_2616del
18 human 9708 PCDHGA8 protocadherin gamma subfami... NM_032088.1 6.4% 6.4% 1_2616del
19 human 5098 PCDHGC3 protocadherin gamma subfami... NM_002588.4 6.4% 6.4% 1_2622del
20 human 56105 PCDHGA11 protocadherin gamma subfami... NM_018914.3 6.4% 6.4% 1_2625del
21 human 56106 PCDHGA10 protocadherin gamma subfami... NM_018913.2 6.4% 6.4% 1_2628del
22 human 56098 PCDHGC4 protocadherin gamma subfami... NM_018928.2 6.3% 6.3% 1_2634del
23 human 56097 PCDHGC5 protocadherin gamma subfami... NM_018929.3 6.3% 6.3% 1_2652del
24 human 56111 PCDHGA4 protocadherin gamma subfami... NM_018917.4 6.2% 6.2% 1_2706del
25 mouse 93701 Pcdhgb4 protocadherin gamma subfami... NM_033576.1 5.9% 6.5% (many diffs)
26 mouse 103611159 Gm38667 predicted gene, 38667 NM_001301259.1 5.8% 6.5% (many diffs)
27 mouse 93699 Pcdhgb1 protocadherin gamma subfami... NM_033574.3 5.8% 6.5% (many diffs)
28 mouse 100384868 Gm37013 predicted gene, 37013 NM_001174154.2 5.8% 6.5% (many diffs)
29 mouse 93702 Pcdhgb5 protocadherin gamma subfami... NM_033577.1 5.8% 6.4% (many diffs)
30 mouse 103611158 Gm38666 predicted gene, 38666 NM_001301256.1 5.8% 6.4% (many diffs)
31 mouse 93700 Pcdhgb2 protocadherin gamma subfami... NM_033575.3 5.8% 6.4% (many diffs)
32 mouse 93711 Pcdhga3 protocadherin gamma subfami... NM_033586.2 5.8% 6.4% (many diffs)
33 mouse 93704 Pcdhgb7 protocadherin gamma subfami... NM_033579.1 5.8% 6.4% (many diffs)
34 mouse 93703 Pcdhgb6 protocadherin gamma subfami... NM_033578.3 5.8% 6.4% (many diffs)
35 mouse 93712 Pcdhga4 protocadherin gamma subfami... NM_033587.3 5.8% 6.4% (many diffs)
36 mouse 93722 Pcdhga10 protocadherin gamma subfami... NM_033593.3 5.8% 6.4% (many diffs)
37 mouse 93705 Pcdhgb8 protocadherin gamma subfami... NM_033580.3 5.8% 6.4% (many diffs)
38 mouse 93709 Pcdhga1 protocadherin gamma subfami... NM_033584.1 5.8% 6.4% (many diffs)
39 mouse 93710 Pcdhga2 protocadherin gamma subfami... NM_033585.1 5.8% 6.4% (many diffs)
40 mouse 93713 Pcdhga5 protocadherin gamma subfami... NM_033588.4 5.7% 6.4% (many diffs)
41 mouse 93714 Pcdhga6 protocadherin gamma subfami... NM_033589.1 5.7% 6.4% (many diffs)
42 mouse 93716 Pcdhga8 protocadherin gamma subfami... NM_033591.3 5.7% 6.4% (many diffs)
43 mouse 93717 Pcdhga9 protocadherin gamma subfami... NM_033592.3 5.7% 6.4% (many diffs)
44 mouse 93724 Pcdhga12 protocadherin gamma subfami... NM_033595.4 5.7% 6.4% (many diffs)
45 mouse 93723 Pcdhga11 protocadherin gamma subfami... NM_033594.2 5.7% 6.4% (many diffs)
46 mouse 93706 Pcdhgc3 protocadherin gamma subfami... NM_033581.3 5.7% 6.4% (many diffs)
47 mouse 93715 Pcdhga7 protocadherin gamma subfami... NM_033590.3 5.7% 6.4% (many diffs)
48 mouse 93707 Pcdhgc4 protocadherin gamma subfami... NM_033582.2 5.7% 6.3% (many diffs)
49 mouse 93708 Pcdhgc5 protocadherin gamma subfami... NM_033583.3 5.7% 6.3% (many diffs)
50 mouse 93705 Pcdhgb8 protocadherin gamma subfami... NR_160734.1 5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
246
ORF length:
180
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAANAAG
61TTGGCATGGG ATTGAGCGCC CGCTACGGAC CCCAGTTCAC CCTGCAGCAC GTGCCCGACT
121ACCGCCAGAA TGTCTACATC CCAGGCAGCA ATGCCACACT GACCAACGCA GCTGGCAAGC
181GGGATGGCAA GGCCCCAGCA GGTGGCAATG GCAACAAGAA GAAGTCGGGC AAGAAGGAGA
241AGAAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
301gttgcaacga ac

Download FASTA (ORF) (Full)