Construct: ORF TRCN0000466539
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002324.1_s317c1
- Derived from:
- ccsbBroadEn_01151
- DNA Barcode:
- CATGGTTCGGTAATGAAAGTTCCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCDHGC3 (5098)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466539
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5098 | PCDHGC3 | protocadherin gamma subfami... | NM_032403.3 | 100% | 100% | |
| 2 | human | 56105 | PCDHGA11 | protocadherin gamma subfami... | NM_032092.2 | 17.4% | 16.8% | (many diffs) |
| 3 | human | 56103 | PCDHGB2 | protocadherin gamma subfami... | NM_018923.2 | 14.2% | 13.7% | (many diffs) |
| 4 | human | 56101 | PCDHGB5 | protocadherin gamma subfami... | NM_018925.2 | 14.2% | 13.6% | (many diffs) |
| 5 | human | 56112 | PCDHGA3 | protocadherin gamma subfami... | NM_018916.4 | 14.1% | 13.5% | (many diffs) |
| 6 | human | 56108 | PCDHGA7 | protocadherin gamma subfami... | NM_018920.4 | 14.1% | 13.5% | (many diffs) |
| 7 | human | 56105 | PCDHGA11 | protocadherin gamma subfami... | NM_018914.3 | 14.1% | 13.4% | (many diffs) |
| 8 | human | 56100 | PCDHGB6 | protocadherin gamma subfami... | NM_018926.2 | 14.1% | 13.6% | (many diffs) |
| 9 | human | 9708 | PCDHGA8 | protocadherin gamma subfami... | NM_032088.1 | 14.1% | 13.6% | (many diffs) |
| 10 | human | 56104 | PCDHGB1 | protocadherin gamma subfami... | NM_018922.2 | 14.1% | 13.4% | (many diffs) |
| 11 | human | 56098 | PCDHGC4 | protocadherin gamma subfami... | NM_018928.2 | 14.1% | 13.5% | (many diffs) |
| 12 | human | 5098 | PCDHGC3 | protocadherin gamma subfami... | NM_002588.4 | 14% | 13.4% | (many diffs) |
| 13 | human | 56114 | PCDHGA1 | protocadherin gamma subfami... | NM_018912.2 | 14% | 13.4% | (many diffs) |
| 14 | human | 26025 | PCDHGA12 | protocadherin gamma subfami... | NM_003735.3 | 14% | 13.6% | (many diffs) |
| 15 | human | 56109 | PCDHGA6 | protocadherin gamma subfami... | NM_018919.3 | 14% | 13.4% | (many diffs) |
| 16 | human | 56099 | PCDHGB7 | protocadherin gamma subfami... | NM_018927.4 | 14% | 13.7% | (many diffs) |
| 17 | human | 56106 | PCDHGA10 | protocadherin gamma subfami... | NM_018913.2 | 13.9% | 13.3% | (many diffs) |
| 18 | human | 56110 | PCDHGA5 | protocadherin gamma subfami... | NM_018918.2 | 13.9% | 13.4% | (many diffs) |
| 19 | human | 56097 | PCDHGC5 | protocadherin gamma subfami... | NM_018929.3 | 13.9% | 13.5% | (many diffs) |
| 20 | human | 56113 | PCDHGA2 | protocadherin gamma subfami... | NM_018915.4 | 13.9% | 13.4% | (many diffs) |
| 21 | human | 56107 | PCDHGA9 | protocadherin gamma subfami... | NM_018921.2 | 13.9% | 13.4% | (many diffs) |
| 22 | human | 56102 | PCDHGB3 | protocadherin gamma subfami... | NM_018924.5 | 13.8% | 13.4% | (many diffs) |
| 23 | human | 8641 | PCDHGB4 | protocadherin gamma subfami... | NM_003736.3 | 13.7% | 13.7% | (many diffs) |
| 24 | human | 56111 | PCDHGA4 | protocadherin gamma subfami... | NM_018917.4 | 13.6% | 12.8% | (many diffs) |
| 25 | mouse | 93701 | Pcdhgb4 | protocadherin gamma subfami... | NM_033576.1 | 13.2% | 13.7% | (many diffs) |
| 26 | mouse | 103611159 | Gm38667 | predicted gene, 38667 | NM_001301259.1 | 13.2% | 13.6% | (many diffs) |
| 27 | mouse | 100384868 | Gm37013 | predicted gene, 37013 | NM_001174154.2 | 13% | 13.6% | (many diffs) |
| 28 | mouse | 93714 | Pcdhga6 | protocadherin gamma subfami... | NM_033589.1 | 13% | 13.3% | (many diffs) |
| 29 | mouse | 93705 | Pcdhgb8 | protocadherin gamma subfami... | NM_033580.3 | 13% | 13.4% | (many diffs) |
| 30 | mouse | 93702 | Pcdhgb5 | protocadherin gamma subfami... | NM_033577.1 | 13% | 13.2% | (many diffs) |
| 31 | mouse | 93724 | Pcdhga12 | protocadherin gamma subfami... | NM_033595.4 | 13% | 13.4% | (many diffs) |
| 32 | mouse | 103611158 | Gm38666 | predicted gene, 38666 | NM_001301256.1 | 13% | 13.4% | (many diffs) |
| 33 | mouse | 93717 | Pcdhga9 | protocadherin gamma subfami... | NM_033592.3 | 13% | 13.3% | (many diffs) |
| 34 | mouse | 93700 | Pcdhgb2 | protocadherin gamma subfami... | NM_033575.3 | 13% | 13.6% | (many diffs) |
| 35 | mouse | 93703 | Pcdhgb6 | protocadherin gamma subfami... | NM_033578.3 | 12.9% | 13.2% | (many diffs) |
| 36 | mouse | 93707 | Pcdhgc4 | protocadherin gamma subfami... | NM_033582.2 | 12.9% | 13.3% | (many diffs) |
| 37 | mouse | 93723 | Pcdhga11 | protocadherin gamma subfami... | NM_033594.2 | 12.9% | 13.3% | (many diffs) |
| 38 | mouse | 93706 | Pcdhgc3 | protocadherin gamma subfami... | NM_033581.3 | 12.9% | 13.3% | (many diffs) |
| 39 | mouse | 93699 | Pcdhgb1 | protocadherin gamma subfami... | NM_033574.3 | 12.9% | 13.4% | (many diffs) |
| 40 | mouse | 93722 | Pcdhga10 | protocadherin gamma subfami... | NM_033593.3 | 12.9% | 13.3% | (many diffs) |
| 41 | mouse | 93709 | Pcdhga1 | protocadherin gamma subfami... | NM_033584.1 | 12.9% | 13.3% | (many diffs) |
| 42 | mouse | 93712 | Pcdhga4 | protocadherin gamma subfami... | NM_033587.3 | 12.9% | 13.4% | (many diffs) |
| 43 | mouse | 93704 | Pcdhgb7 | protocadherin gamma subfami... | NM_033579.1 | 12.9% | 13.2% | (many diffs) |
| 44 | mouse | 93708 | Pcdhgc5 | protocadherin gamma subfami... | NM_033583.3 | 12.8% | 13.5% | (many diffs) |
| 45 | mouse | 93713 | Pcdhga5 | protocadherin gamma subfami... | NM_033588.4 | 12.7% | 13.4% | (many diffs) |
| 46 | mouse | 93711 | Pcdhga3 | protocadherin gamma subfami... | NM_033586.2 | 12.6% | 13.2% | (many diffs) |
| 47 | mouse | 93716 | Pcdhga8 | protocadherin gamma subfami... | NM_033591.3 | 12.6% | 13.2% | (many diffs) |
| 48 | mouse | 93710 | Pcdhga2 | protocadherin gamma subfami... | NM_033585.1 | 12.5% | 13.2% | (many diffs) |
| 49 | mouse | 93715 | Pcdhga7 | protocadherin gamma subfami... | NM_033590.3 | 12.3% | 13.3% | (many diffs) |
| 50 | mouse | 93705 | Pcdhgb8 | protocadherin gamma subfami... | NR_160734.1 | 11.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 468
- ORF length:
- 402
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt cccagaggcc tggaggagcg gactgcaagc cccgcccaac acggactggc 121 gtttctctca ggcccagaga cccggcacca gcggctccca aaatggcgat gacaccggca 181 cctggcccaa caaccagttt gacacagaga tgctgcaagc catgatcttg gcgtccgcca 241 gtgaagctgc tgatgggagc tccaccctgg gagggggtgc cggcaccatg ggattgagcg 301 cccgctacgg accccagttc acccTGCAGC ACGTGCCCGA CTACCGCCAG AATGTCTACA 361 TCCCAGGCAG CAATGCCACA CTGACCAACG CAGCTGGCAA GCGGGATGGC AAGGCCCCAG 421 CAGGTGGCAA TGGCAACAAG AAGAAGTCGG GCAAGAAGGA GAAGAAGTAC CCAACTTTCT 481 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 541 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 601 GTGGAAAGGA CGACATGGTT CGGTAATGAA AGTTCCAACG CGTTAAGTCg acaatcaacc 661 tctggattac aaaatttgtg aaagatt