Transcript: Human NM_019844.4

Homo sapiens solute carrier organic anion transporter family member 1B3 (SLCO1B3), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
SLCO1B3 (28234)
Length:
3013
CDS:
241..2349

Additional Resources:

NCBI RefSeq record:
NM_019844.4
NBCI Gene record:
SLCO1B3 (28234)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_019844.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043276 CCAAGGCATCGGACAATGAAA pLKO.1 2207 CDS 100% 5.625 7.875 N SLCO1B3 n/a
2 TRCN0000431989 GGTAGTTGTAACTGCTAATAA pLKO_005 2595 3UTR 100% 15.000 10.500 N SLCO1B3 n/a
3 TRCN0000417024 TGGTTAGTGTGTGATACAATA pLKO_005 2560 3UTR 100% 13.200 9.240 N SLCO1B3 n/a
4 TRCN0000043274 GCTTTAAGATTCCCAGCACTT pLKO.1 2131 CDS 100% 4.050 2.835 N SLCO1B3 n/a
5 TRCN0000412427 TTTGACATCTTTACCACATTT pLKO_005 567 CDS 100% 13.200 6.600 Y SLCO1B3 n/a
6 TRCN0000072840 CCACATTTCTTCATGGGATAT pLKO.1 580 CDS 100% 10.800 5.400 Y SLCO1B7 n/a
7 TRCN0000043277 CTATCATTGCATGTGCTGAAA pLKO.1 1120 CDS 100% 4.950 2.475 Y SLCO1B3 n/a
8 TRCN0000043273 CCCTCTAATCTGCGAAAGCAA pLKO.1 1518 CDS 100% 3.000 1.500 Y SLCO1B3 n/a
9 TRCN0000043275 GTAGTTTGAATGCAATAGGAA pLKO.1 869 CDS 100% 3.000 1.500 Y SLCO1B3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019844.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000487849 TAAATCGAGAGATATGCACCCAAC pLX_317 12% 99.8% 99.7% V5 (not translated due to prior stop codon) 334T>G;699G>A;1557A>G n/a
2 TRCN0000488551 AAGTGTCATATTCGTACTGCCTCG pLX_317 17.7% 85.7% 78.5% V5 (not translated due to prior stop codon) (many diffs) n/a
3 ccsbBroadEn_07645 pDONR223 100% 85.6% 78.2% None (many diffs) n/a
4 ccsbBroad304_07645 pLX_304 0% 85.6% 78.2% V5 (many diffs) n/a
5 TRCN0000487974 ACGCTTTTAGTTCCCAGCCAACGC pLX_317 14.6% 85.6% 78.3% V5 (not translated due to prior stop codon) (many diffs) n/a
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