Transcript: Human NM_024328.6

Homo sapiens thiamine triphosphatase (THTPA), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
THTPA (79178)
Length:
2611
CDS:
488..1180

Additional Resources:

NCBI RefSeq record:
NM_024328.6
NBCI Gene record:
THTPA (79178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_024328.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271651 TTAGCCGTGATCAGTAGTTAA pLKO_005 1453 3UTR 100% 13.200 18.480 N THTPA n/a
2 TRCN0000201985 CCATTGATTTCCGCTCGTGTT pLKO.1 1418 3UTR 100% 4.050 5.670 N Thtpa n/a
3 TRCN0000271602 GTTTCCGGCCTCAAGACTATC pLKO_005 1086 CDS 100% 10.800 8.640 N THTPA n/a
4 TRCN0000051079 GACTTGGATACAGCCGACTTT pLKO.1 920 CDS 100% 4.950 3.960 N THTPA n/a
5 TRCN0000281814 ATAGTGGATGGGAGCTCAAAT pLKO_005 663 CDS 100% 13.200 9.240 N THTPA n/a
6 TRCN0000051078 GCCAAGCTGATTGTGTATCTA pLKO.1 1061 CDS 100% 5.625 3.938 N THTPA n/a
7 TRCN0000051080 GCTGCAGGAAGTAGCTAGTTT pLKO.1 829 CDS 100% 5.625 3.938 N THTPA n/a
8 TRCN0000281762 AGTACCAACTGCCCTAGAGAA pLKO_005 988 CDS 100% 4.950 3.465 N THTPA n/a
9 TRCN0000271603 GCTCTTGGGAGCTGATGAAGA pLKO_005 880 CDS 100% 4.950 3.465 N THTPA n/a
10 TRCN0000051082 GAACCTACAATTGTGGCCCAA pLKO.1 740 CDS 100% 2.160 1.512 N THTPA n/a
11 TRCN0000051081 ACCTTCCGAGACACCTACTAT pLKO.1 587 CDS 100% 5.625 3.375 N THTPA n/a
12 TRCN0000190064 GAGCTCAAATGTCCTGGAGTA pLKO.1 674 CDS 100% 4.050 2.835 N Thtpa n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024328.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04067 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04067 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000474218 CCTGTACGTTCTTAGATCACAACT pLX_317 70.4% 100% 100% V5 n/a
Download CSV