Transcript: Mouse NM_029814.1

Mus musculus charged multivesicular body protein 5 (Chmp5), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Chmp5 (76959)
Length:
1372
CDS:
56..715

Additional Resources:

NCBI RefSeq record:
NM_029814.1
NBCI Gene record:
Chmp5 (76959)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029814.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000273035 CTTCGTAGACTTACAACATTC pLKO_005 708 CDS 100% 10.800 15.120 N Chmp5 n/a
2 TRCN0000272979 TAACATGGAGCAAGCTAATTA pLKO_005 316 CDS 100% 15.000 10.500 N Chmp5 n/a
3 TRCN0000009722 GAAGGCATATAAGGAAGTAAA pLKO.1 406 CDS 100% 13.200 9.240 N Chmp5 n/a
4 TRCN0000429392 GCTGATACATTGATAAGATAA pLKO_005 1061 3UTR 100% 13.200 9.240 N Chmp5 n/a
5 TRCN0000382317 TTGACCAGATTGAGGACTTAC pLKO_005 429 CDS 100% 10.800 7.560 N Chmp5 n/a
6 TRCN0000009721 CCTGCTAAGAACATGGTCAAA pLKO.1 221 CDS 100% 4.950 3.465 N Chmp5 n/a
7 TRCN0000273036 CCTGCTAAGAACATGGTCAAA pLKO_005 221 CDS 100% 4.950 3.465 N Chmp5 n/a
8 TRCN0000382194 GACACCAAGACCACGGTTGAT pLKO_005 356 CDS 100% 4.950 3.465 N Chmp5 n/a
9 TRCN0000374063 TAGCAGGGCAGAATCCATTGA pLKO_005 130 CDS 100% 4.950 3.465 N Chmp5 n/a
10 TRCN0000009720 CCAGTCACTAAAGGACACCAA pLKO.1 343 CDS 100% 2.640 1.848 N Chmp5 n/a
11 TRCN0000009719 CCAACCAGATTTAGGTTTCTT pLKO.1 790 3UTR 100% 5.625 3.375 N Chmp5 n/a
12 TRCN0000321089 CCAACCAGATTTAGGTTTCTT pLKO_005 790 3UTR 100% 5.625 3.375 N Chmp5 n/a
13 TRCN0000009723 CTGGAGGATATGATGGAAGAT pLKO.1 458 CDS 100% 4.950 2.970 N Chmp5 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029814.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03320 pDONR223 100% 87.8% 98.6% None (many diffs) n/a
2 ccsbBroad304_03320 pLX_304 0% 87.8% 98.6% V5 (many diffs) n/a
3 TRCN0000469582 ACCTGAGCACGTCTCGGAATGACG pLX_317 56.8% 87.8% 98.6% V5 (many diffs) n/a
4 ccsbBroadEn_08303 pDONR223 100% 87.6% 98.6% None (many diffs) n/a
5 ccsbBroad304_08303 pLX_304 0% 87.6% 98.6% V5 (many diffs) n/a
6 TRCN0000473937 CCAAAACGATTCATATGGTGAGAA pLX_317 74.4% 87.6% 98.6% V5 (many diffs) n/a
7 ccsbBroadEn_15846 pDONR223 0% 87.6% 98.1% None (many diffs) n/a
8 ccsbBroad304_15846 pLX_304 0% 87.6% 98.1% V5 (many diffs) n/a
9 TRCN0000474383 GACTATCGCAGTATATCCCATGCG pLX_317 56.8% 87.5% 98.1% V5 (many diffs) n/a
Download CSV