Transcript: Human NM_032406.1

Homo sapiens protocadherin gamma subfamily C, 4 (PCDHGC4), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
PCDHGC4 (56098)
Length:
2616
CDS:
1..2616

Additional Resources:

NCBI RefSeq record:
NM_032406.1
NBCI Gene record:
PCDHGC4 (56098)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032406.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056134 GCAATTCGATTAGCAGCTATA pLKO.1 491 CDS 100% 10.800 15.120 N PCDHGC4 n/a
2 TRCN0000056133 GCACTGTAACAGTTCGTCTAT pLKO.1 1640 CDS 100% 4.950 6.930 N PCDHGC4 n/a
3 TRCN0000425430 ATCGTGTAAGAAACCTCTTTA pLKO_005 860 CDS 100% 13.200 9.240 N PCDHGC4 n/a
4 TRCN0000430800 CAGATGACCCTATCAAGTTTG pLKO_005 2267 CDS 100% 10.800 7.560 N PCDHGC4 n/a
5 TRCN0000421760 CTCTGGCTTGAATGCGCTTAT pLKO_005 1449 CDS 100% 10.800 7.560 N PCDHGC4 n/a
6 TRCN0000433122 GGTATCCGTGCTGGACGTAAA pLKO_005 687 CDS 100% 10.800 7.560 N PCDHGC4 n/a
7 TRCN0000056137 GCAATTTGCTTTGTCTCCTTT pLKO.1 2095 CDS 100% 4.950 3.465 N PCDHGC4 n/a
8 TRCN0000056136 GCAGAGGTAGAGATCGTAGAT pLKO.1 355 CDS 100% 4.950 3.465 N PCDHGC4 n/a
9 TRCN0000416662 TCAGTACCCACAGAACTATTT pLKO_005 1304 CDS 100% 13.200 7.920 N PCDHGC4 n/a
10 TRCN0000056135 CCACCCTCTGATCTTCTCTAT pLKO.1 2413 CDS 100% 4.950 2.970 N PCDHGC4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032406.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03698 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03698 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472240 CGCCTGAGTGAGGTATCTTTGTAC pLX_317 14.3% 100% 100% V5 n/a
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