Transcript: Mouse NM_054081.2

Mus musculus metastasis associated 1 (Mta1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Mta1 (116870)
Length:
2775
CDS:
141..2237

Additional Resources:

NCBI RefSeq record:
NM_054081.2
NBCI Gene record:
Mta1 (116870)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_054081.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013362 GCGCATCTTGTTGGACATATT pLKO.1 1339 CDS 100% 13.200 18.480 N MTA1 n/a
2 TRCN0000230497 TGCGCATCTTGTTGGACATAT pLKO_005 1338 CDS 100% 13.200 18.480 N MTA1 n/a
3 TRCN0000039259 GCAGGTTTATATTCCCAACTA pLKO.1 1145 CDS 100% 4.950 6.930 N Mta1 n/a
4 TRCN0000334112 GCAGGTTTATATTCCCAACTA pLKO_005 1145 CDS 100% 4.950 6.930 N Mta1 n/a
5 TRCN0000039262 GCACAAGAACATCTACGACAT pLKO.1 863 CDS 100% 4.050 3.240 N Mta1 n/a
6 TRCN0000334044 GCACAAGAACATCTACGACAT pLKO_005 863 CDS 100% 4.050 3.240 N Mta1 n/a
7 TRCN0000230496 TGAAGCTGAGAGCAAGTTAAA pLKO_005 1124 CDS 100% 13.200 9.240 N MTA1 n/a
8 TRCN0000039261 CCGCAGGATTGAAGAGCTTAA pLKO.1 212 CDS 100% 10.800 7.560 N Mta1 n/a
9 TRCN0000334110 CCGCAGGATTGAAGAGCTTAA pLKO_005 212 CDS 100% 10.800 7.560 N Mta1 n/a
10 TRCN0000039260 CCCACAATCCACTTGTGGATA pLKO.1 691 CDS 100% 0.495 0.347 N Mta1 n/a
11 TRCN0000334043 CCCACAATCCACTTGTGGATA pLKO_005 691 CDS 100% 0.495 0.347 N Mta1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_054081.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11334 pDONR223 100% 31.8% 35% None (many diffs) n/a
2 ccsbBroad304_11334 pLX_304 0% 31.8% 35% V5 (many diffs) n/a
3 TRCN0000471695 CCAGCCTATGATCGCTAAACGGTT pLX_317 55.1% 31.8% 35% V5 (many diffs) n/a
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