Transcript: Human NM_134325.2

Homo sapiens solute carrier family 26 member 9 (SLC26A9), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-06-24
Taxon:
Homo sapiens (human)
Gene:
SLC26A9 (115019)
Length:
4638
CDS:
115..2778

Additional Resources:

NCBI RefSeq record:
NM_134325.2
NBCI Gene record:
SLC26A9 (115019)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_134325.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044050 CCCAGGTGTACAATGACATTA pLKO.1 2225 CDS 100% 13.200 18.480 N SLC26A9 n/a
2 TRCN0000296823 GTCACGGACATAGGGATAAAC pLKO_005 2766 CDS 100% 13.200 18.480 N SLC26A9 n/a
3 TRCN0000044052 GATCCTGATTTCGGTGCTCAA pLKO.1 756 CDS 100% 4.050 3.240 N SLC26A9 n/a
4 TRCN0000291285 GATCCTGATTTCGGTGCTCAA pLKO_005 756 CDS 100% 4.050 3.240 N SLC26A9 n/a
5 TRCN0000296885 GTGAATCCCAAGACCTATAAT pLKO_005 1657 CDS 100% 15.000 10.500 N SLC26A9 n/a
6 TRCN0000296821 TCTTTACCTTCATTGACATTT pLKO_005 827 CDS 100% 13.200 9.240 N SLC26A9 n/a
7 TRCN0000296819 TAGAATGCAAGCACGTCTTTC pLKO_005 2276 CDS 100% 10.800 7.560 N SLC26A9 n/a
8 TRCN0000044048 GCTCGCTACATGCACAAGATT pLKO.1 934 CDS 100% 5.625 3.938 N SLC26A9 n/a
9 TRCN0000044051 GTGGGAGAGAAACTTCGCAAT pLKO.1 211 CDS 100% 4.050 2.835 N SLC26A9 n/a
10 TRCN0000044049 CCAGAAAGTATTACTAGCCAA pLKO.1 1788 CDS 100% 2.640 1.848 N SLC26A9 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_134325.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09411 pDONR223 100% 89.1% 89% None 192G>C;2373_2661delinsG n/a
2 ccsbBroad304_09411 pLX_304 0% 89.1% 89% V5 192G>C;2373_2661delinsG n/a
3 TRCN0000476089 GGCGACATTGCGCTGAAATTTATA pLX_317 13.2% 89.1% 89% V5 192G>C;2373_2661delinsG n/a
Download CSV