Construct: ORF ccsbBroad304_09411
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006111.1_s304c1, BRDN0000462124
- Derived from:
- ccsbBroadEn_09411
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC26A9 (115019)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09411
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115019 | SLC26A9 | solute carrier family 26 me... | NM_052934.4 | 99.9% | 99.8% | 192G>C |
| 2 | human | 115019 | SLC26A9 | solute carrier family 26 me... | NM_134325.2 | 89.1% | 89% | 192G>C;2373_2661delinsG |
| 3 | human | 115019 | SLC26A9 | solute carrier family 26 me... | XM_011509121.2 | 88.7% | 88.7% | 0_1ins267 |
| 4 | human | 115019 | SLC26A9 | solute carrier family 26 me... | XM_011509122.2 | 79.2% | 79.2% | 0_1ins492 |
| 5 | human | 115019 | SLC26A9 | solute carrier family 26 me... | XM_011509124.2 | 58.7% | 58.4% | (many diffs) |
| 6 | human | 115019 | SLC26A9 | solute carrier family 26 me... | XR_001736957.1 | 48.4% | (many diffs) | |
| 7 | mouse | 320718 | Slc26a9 | solute carrier family 26, m... | NM_177243.4 | 86.7% | 89.6% | (many diffs) |
| 8 | mouse | 320718 | Slc26a9 | solute carrier family 26, m... | XM_006529700.2 | 86.7% | 89.6% | (many diffs) |
| 9 | mouse | 320718 | Slc26a9 | solute carrier family 26, m... | XR_387176.2 | 59.2% | (many diffs) | |
| 10 | mouse | 320718 | Slc26a9 | solute carrier family 26, m... | XM_006529701.1 | 55.4% | 56.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2442
- ORF length:
- 2373
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gagccagccc aggccccgct acgtggtaga cagagccgca tactccctta 121 ccctcttcga cgatgagttt gagaagaagg accggacata cccagtggga gagaaacttc 181 gcaatgcctt cagatgttcc tcagccaaga tcaaagctgt ggtgtttggg ctgctgcctg 241 tgctctcctg gctccccaac tacaagatta aagactacat cattcctgac ctgctcggtg 301 gactcagcgg gggatccatc caggtcccac aaggcatggc atttgctctg ctggccaacc 361 ttcctgcagt caatggcctc tactcctcct tcttccccct cctgacctac ttcttcctgg 421 ggggtgttca ccagatggtg ccaggtacct ttgccgttat cagcatcctg gtgggtaaca 481 tctgtctgca gctggcccca gagtcgaaat tccaggtctt caacaatgcc accaatgaga 541 gctatgtgga cacagcagcc atggaggctg agaggctgca cgtgtcagct acgctagcct 601 gcctcaccgc catcatccag atgggtctgg gcttcatgca gtttggcttt gtggccatct 661 acctctccga gtccttcatc cggggcttca tgacggccgc cggcctgcag atcctgattt 721 cggtgctcaa gtacatcttc ggactgacca tcccctccta cacaggccca gggtccatcg 781 tctttacctt cattgacatt tgcaaaaacc tcccccacac caacatcgcc tcgctcatct 841 tcgctctcat cagcggtgcc ttcctggtgc tggtgaagga gctcaatgct cgctacatgc 901 acaagattcg cttccccatc cctacagaga tgattgtggt ggtggtggca acagctatct 961 ccgggggctg taagatgccc aaaaagtatc acatgcagat cgtgggagaa atccaacgcg 1021 ggttccccac cccggtgtcg cctgtggtct cacagtggaa ggacatgata ggcacagcct 1081 tctccctagc catcgtgagc tacgtcatca acctggctat gggccggacc ctggccaaca 1141 agcacggcta cgacgtggat tcgaaccagg agatgatcgc tctcggctgc agcaacttct 1201 ttggctcctt ctttaaaatt catgtcattt gctgtgcgct ttctgtcact ctggctgtgg 1261 atggagctgg aggaaaatcc caggtggcca gcctgtgtgt gtctctggtg gtgatgatca 1321 ccatgctggt cctggggatc tatctgtatc ctctccctaa gtctgtgcta ggagccctga 1381 tcgctgtcaa tctcaagaac tccctcaagc aactcaccga cccctactac ctgtggagga 1441 agagcaagct ggactgttgc atctgggtag tgagcttcct ctcctccttc ttcctcagcc 1501 tgccctatgg tgtggcagtg ggtgtcgcct tctccgtcct ggtcgtggtc ttccagactc 1561 agtttcgaaa tggctatgca ctggcccagg tcatggacac tgacatttat gtgaatccca 1621 agacctataa tagggcccag gatatccagg ggattaaaat catcacgtac tgctcccctc 1681 tctactttgc caactcagag atcttcaggc aaaaggtcat cgccaagaca ggcatggacc 1741 cccagaaagt attactagcc aagcaaaaat acctcaagaa gcaggagaag cggagaatga 1801 ggcccacaca acagaggagg tctctattca tgaaaaccaa gactgtctcc ctgcaggagc 1861 tgcagcagga ctttgagaat gcgcccccca ccgaccccaa caacaaccag accccggcta 1921 acggcaccag cgtgtcctat atcaccttca gccctgacag ctcctcacct gcccagagtg 1981 agccaccagc ctccgctgag gcccccggcg agcccagtga catgctggcc agcgtcccac 2041 ccttcgtcac cttccacacc ctcatcctgg acatgagtgg agtcagcttc gtggacttga 2101 tgggcatcaa ggccctggcc aagctgagct ccacctatgg gaagatcggc gtgaaggtct 2161 tcttggtgaa catccatgcc caggtgtaca atgacattag ccatggaggc gtctttgagg 2221 atgggagtct agaatgcaag cacgtctttc ccagcataca tgacgcagtc ctctttgccc 2281 aggcaaatgc tagagacgtg accccaggac acaacttcca aggggctcca ggggatgctg 2341 agctctcctt gtacgactca gaggaggaca ttcgcagcta ctgggactta gagcaggaga 2401 tgttcgggag catgtttcac gcagagaccc tgaccgccct gttgccaact ttcttgtaca 2461 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 2521 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta