Construct: ORF ccsbBroadEn_09411

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006111.1_s300c1, BRDN0000457167
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC26A9 (115019)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 115019 SLC26A9 solute carrier family 26 me... NM_052934.4 99.9% 99.8% 192G>C
2 human 115019 SLC26A9 solute carrier family 26 me... NM_134325.2 89.1% 89% 192G>C;2373_2661delinsG
3 human 115019 SLC26A9 solute carrier family 26 me... XM_011509121.2 88.7% 88.7% 0_1ins267
4 human 115019 SLC26A9 solute carrier family 26 me... XM_011509122.2 79.2% 79.2% 0_1ins492
5 human 115019 SLC26A9 solute carrier family 26 me... XM_011509124.2 58.7% 58.4% (many diffs)
6 human 115019 SLC26A9 solute carrier family 26 me... XR_001736957.1 48.4% (many diffs)
7 mouse 320718 Slc26a9 solute carrier family 26, m... NM_177243.4 86.7% 89.6% (many diffs)
8 mouse 320718 Slc26a9 solute carrier family 26, m... XM_006529700.2 86.7% 89.6% (many diffs)
9 mouse 320718 Slc26a9 solute carrier family 26, m... XR_387176.2 59.2% (many diffs)
10 mouse 320718 Slc26a9 solute carrier family 26, m... XM_006529701.1 55.4% 56.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2442
ORF length:
2373
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGCCAGCCC AGGCCCCGCT ACGTGGTAGA CAGAGCCGCA TACTCCCTTA
121CCCTCTTCGA CGATGAGTTT GAGAAGAAGG ACCGGACATA CCCAGTGGGA GAGAAACTTC
181GCAATGCCTT CAGATGTTCC TCAGCCAAGA TCAAAGCTGT GGTGTTTGGG CTGCTGCCTG
241TGCTCTCCTG GCTCCCCAAC TACAAGATTA AAGACTACAT CATTCCTGAC CTGCTCGGTG
301GACTCAGCGG GGGATCCATC CAGGTCCCAC AAGGCATGGC ATTTGCTCTG CTGGCCAACC
361TTCCTGCAGT CAATGGCCTC TACTCCTCCT TCTTCCCCCT CCTGACCTAC TTCTTCCTGG
421GGGGTGTTCA CCAGATGGTG CCAGGTACCT TTGCCGTTAT CAGCATCCTG GTGGGTAACA
481TCTGTCTGCA GCTGGCCCCA GAGTCGAAAT TCCAGGTCTT CAACAATGCC ACCAATGAGA
541GCTATGTGGA CACAGCAGCC ATGGAGGCTG AGAGGCTGCA CGTGTCAGCT ACGCTAGCCT
601GCCTCACCGC CATCATCCAG ATGGGTCTGG GCTTCATGCA GTTTGGCTTT GTGGCCATCT
661ACCTCTCCGA GTCCTTCATC CGGGGCTTCA TGACGGCCGC CGGCCTGCAG ATCCTGATTT
721CGGTGCTCAA GTACATCTTC GGACTGACCA TCCCCTCCTA CACAGGCCCA GGGTCCATCG
781TCTTTACCTT CATTGACATT TGCAAAAACC TCCCCCACAC CAACATCGCC TCGCTCATCT
841TCGCTCTCAT CAGCGGTGCC TTCCTGGTGC TGGTGAAGGA GCTCAATGCT CGCTACATGC
901ACAAGATTCG CTTCCCCATC CCTACAGAGA TGATTGTGGT GGTGGTGGCA ACAGCTATCT
961CCGGGGGCTG TAAGATGCCC AAAAAGTATC ACATGCAGAT CGTGGGAGAA ATCCAACGCG
1021GGTTCCCCAC CCCGGTGTCG CCTGTGGTCT CACAGTGGAA GGACATGATA GGCACAGCCT
1081TCTCCCTAGC CATCGTGAGC TACGTCATCA ACCTGGCTAT GGGCCGGACC CTGGCCAACA
1141AGCACGGCTA CGACGTGGAT TCGAACCAGG AGATGATCGC TCTCGGCTGC AGCAACTTCT
1201TTGGCTCCTT CTTTAAAATT CATGTCATTT GCTGTGCGCT TTCTGTCACT CTGGCTGTGG
1261ATGGAGCTGG AGGAAAATCC CAGGTGGCCA GCCTGTGTGT GTCTCTGGTG GTGATGATCA
1321CCATGCTGGT CCTGGGGATC TATCTGTATC CTCTCCCTAA GTCTGTGCTA GGAGCCCTGA
1381TCGCTGTCAA TCTCAAGAAC TCCCTCAAGC AACTCACCGA CCCCTACTAC CTGTGGAGGA
1441AGAGCAAGCT GGACTGTTGC ATCTGGGTAG TGAGCTTCCT CTCCTCCTTC TTCCTCAGCC
1501TGCCCTATGG TGTGGCAGTG GGTGTCGCCT TCTCCGTCCT GGTCGTGGTC TTCCAGACTC
1561AGTTTCGAAA TGGCTATGCA CTGGCCCAGG TCATGGACAC TGACATTTAT GTGAATCCCA
1621AGACCTATAA TAGGGCCCAG GATATCCAGG GGATTAAAAT CATCACGTAC TGCTCCCCTC
1681TCTACTTTGC CAACTCAGAG ATCTTCAGGC AAAAGGTCAT CGCCAAGACA GGCATGGACC
1741CCCAGAAAGT ATTACTAGCC AAGCAAAAAT ACCTCAAGAA GCAGGAGAAG CGGAGAATGA
1801GGCCCACACA ACAGAGGAGG TCTCTATTCA TGAAAACCAA GACTGTCTCC CTGCAGGAGC
1861TGCAGCAGGA CTTTGAGAAT GCGCCCCCCA CCGACCCCAA CAACAACCAG ACCCCGGCTA
1921ACGGCACCAG CGTGTCCTAT ATCACCTTCA GCCCTGACAG CTCCTCACCT GCCCAGAGTG
1981AGCCACCAGC CTCCGCTGAG GCCCCCGGCG AGCCCAGTGA CATGCTGGCC AGCGTCCCAC
2041CCTTCGTCAC CTTCCACACC CTCATCCTGG ACATGAGTGG AGTCAGCTTC GTGGACTTGA
2101TGGGCATCAA GGCCCTGGCC AAGCTGAGCT CCACCTATGG GAAGATCGGC GTGAAGGTCT
2161TCTTGGTGAA CATCCATGCC CAGGTGTACA ATGACATTAG CCATGGAGGC GTCTTTGAGG
2221ATGGGAGTCT AGAATGCAAG CACGTCTTTC CCAGCATACA TGACGCAGTC CTCTTTGCCC
2281AGGCAAATGC TAGAGACGTG ACCCCAGGAC ACAACTTCCA AGGGGCTCCA GGGGATGCTG
2341AGCTCTCCTT GTACGACTCA GAGGAGGACA TTCGCAGCTA CTGGGACTTA GAGCAGGAGA
2401TGTTCGGGAG CATGTTTCAC GCAGAGACCC TGACCGCCCT GTTGCCAACT TTCTTGTACA
2461AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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