Transcript: Mouse NM_138663.2

Mus musculus protocadherin alpha 12 (Pcdha12), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Pcdha12 (192164)
Length:
5254
CDS:
1..2853

Additional Resources:

NCBI RefSeq record:
NM_138663.2
NBCI Gene record:
Pcdha12 (192164)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_138663.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094986 CGGTTCGTTTACAAAGTTAAA pLKO.1 730 CDS 100% 13.200 18.480 N Pcdha12 n/a
2 TRCN0000094985 CGGAGTTTGATCGGTTCGTTT pLKO.1 719 CDS 100% 4.950 6.930 N Pcdha12 n/a
3 TRCN0000094987 GAAACTAGATTTCCACTAGAT pLKO.1 445 CDS 100% 4.950 3.465 N Pcdha12 n/a
4 TRCN0000094988 GCACCCAAGATATCTTCCCTT pLKO.1 2023 CDS 100% 2.640 1.848 N Pcdha12 n/a
5 TRCN0000094087 CGGTGAGTTGCCAGACAAATT pLKO.1 2643 CDS 100% 13.200 6.600 Y Pcdha6 n/a
6 TRCN0000094979 GCATCCTGTCTTGATGATATT pLKO.1 3172 3UTR 100% 13.200 6.600 Y Pcdha9 n/a
7 TRCN0000094984 GCCAGCAGTTCAAGCGTTTAA pLKO.1 3541 3UTR 100% 13.200 6.600 Y Pcdha12 n/a
8 TRCN0000094754 GCTGCTACAGAAGTGCTTTAA pLKO.1 3870 3UTR 100% 13.200 6.600 Y Pcdha5 n/a
9 TRCN0000094349 CCTCACTTTATGCTGTTTGTT pLKO.1 3719 3UTR 100% 5.625 2.813 Y Pcdha4 n/a
10 TRCN0000094939 CGGAATATCAGCTTGTAGAAA pLKO.1 4704 3UTR 100% 5.625 2.813 Y Pcdhac2 n/a
11 TRCN0000094869 GCACAACTTAGATGTTTGATT pLKO.1 4773 3UTR 100% 5.625 2.813 Y Pcdhac1 n/a
12 TRCN0000094548 GCCTGCTAACAACCAAATTGA pLKO.1 2706 CDS 100% 5.625 2.813 Y Pcdha7 n/a
13 TRCN0000094089 CCGGAATATCAGCTTGTAGAA pLKO.1 4703 3UTR 100% 4.950 2.475 Y Pcdha1 n/a
14 TRCN0000094544 CGCTCCTTTCTCCTATGACAT pLKO.1 2927 3UTR 100% 4.950 2.475 Y Pcdha7 n/a
15 TRCN0000053275 CTGGAGGTAAATCTGCAGAAT pLKO.1 223 CDS 100% 4.950 2.475 Y PCDHA9 n/a
16 TRCN0000094699 GCCCTCAGAAATCTGCAGAAA pLKO.1 2950 3UTR 100% 4.950 2.475 Y Pcdha2 n/a
17 TRCN0000094086 GCTAACAACCAAATTGACAAA pLKO.1 2710 CDS 100% 4.950 2.475 Y Pcdha6 n/a
18 TRCN0000094179 GCTGGCTATAACATCACTGTA pLKO.1 3495 3UTR 100% 4.950 2.475 Y Pcdha10 n/a
19 TRCN0000094874 CCAAATGGAAACAAGCCACTT pLKO.1 2859 3UTR 100% 4.050 2.025 Y Pcdha8 n/a
20 TRCN0000094644 CCACCTTGTTTAGCTTTCCTT pLKO.1 4173 3UTR 100% 3.000 1.500 Y Pcdha11 n/a
21 TRCN0000094614 GCACTTTGATTACACAACCTT pLKO.1 4032 3UTR 100% 3.000 1.500 Y Pcdha3 n/a
22 TRCN0000094877 ACAAATTCATTATCCCAGGAT pLKO.1 2657 CDS 100% 2.640 1.320 Y Pcdha8 n/a
23 TRCN0000094183 CCCGGTGAGTTGCCAGACAAA pLKO.1 2641 CDS 100% 1.650 0.825 Y Pcdha10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138663.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.