Transcript: Human NM_138801.3

Homo sapiens galactose mutarotase (GALM), mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
GALM (130589)
Length:
2277
CDS:
49..1077

Additional Resources:

NCBI RefSeq record:
NM_138801.3
NBCI Gene record:
GALM (130589)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_138801.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049486 TCACCATAGAAGCGGATACTT pLKO.1 629 CDS 100% 5.625 7.875 N GALM n/a
2 TRCN0000440198 TATCCCAAGCACTCCGGTTTC pLKO_005 940 CDS 100% 6.000 4.800 N GALM n/a
3 TRCN0000049485 ACTTCCTGGATGGCACATTAA pLKO.1 899 CDS 100% 13.200 9.240 N GALM n/a
4 TRCN0000049483 CCATACTTTGGAGCAGTTATT pLKO.1 256 CDS 100% 13.200 9.240 N GALM n/a
5 TRCN0000434378 CTTAAGGAAGTGTGAAGATAT pLKO_005 1073 CDS 100% 13.200 9.240 N GALM n/a
6 TRCN0000049487 ACAATTTCTGTCTGAAGGGAT pLKO.1 779 CDS 100% 2.640 1.848 N GALM n/a
7 TRCN0000049484 CCTGTGGATGAAACCCTGATT pLKO.1 655 CDS 100% 4.950 2.970 N GALM n/a
8 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1648 3UTR 100% 4.950 2.475 Y ERAP2 n/a
9 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1649 3UTR 100% 13.200 6.600 Y LIAS n/a
10 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 1807 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_138801.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04864 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04864 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470053 GGCACGATCACTATGGCCTGGCGC pLX_317 47.1% 100% 100% V5 n/a
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