Transcript: Human NM_182522.5

Homo sapiens TAFA chemokine like family member 4 (TAFA4), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
TAFA4 (151647)
Length:
2229
CDS:
431..853

Additional Resources:

NCBI RefSeq record:
NM_182522.5
NBCI Gene record:
TAFA4 (151647)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_182522.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372220 GCCCTCTCTGCTTCGTGATTT pLKO_005 1015 3UTR 100% 13.200 18.480 N TAFA4 n/a
2 TRCN0000146659 CCAAAGCTCTATCAGAACATA pLKO.1 1565 3UTR 100% 5.625 7.875 N TAFA4 n/a
3 TRCN0000148560 CGTGTTAATGGTGTGCTGTAA pLKO.1 499 CDS 100% 4.950 6.930 N TAFA4 n/a
4 TRCN0000372222 GCTAGAGATCAACTGATTAAC pLKO_005 1347 3UTR 100% 13.200 10.560 N TAFA4 n/a
5 TRCN0000146807 CCTTGAAGAATAGAAGGACAT pLKO.1 1393 3UTR 100% 4.050 3.240 N TAFA4 n/a
6 TRCN0000150113 CCCTGTCCTTTCACATTTATA pLKO.1 2050 3UTR 100% 15.000 10.500 N TAFA4 n/a
7 TRCN0000264640 TCCTGTAGCAGTGGCAATAAA pLKO_005 806 CDS 100% 15.000 10.500 N Fam19a4 n/a
8 TRCN0000372166 CGTGCACAGGTGCTGCAATAA pLKO_005 601 CDS 100% 13.200 9.240 N TAFA4 n/a
9 TRCN0000128862 GATTCAGAAATGGTGGTGTCA pLKO.1 727 CDS 100% 2.640 1.848 N TAFA4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_182522.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05055 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05055 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000480668 GGTCCCTAGTCCCCTATCTTCAAG pLX_317 100% 100% 100% V5 n/a
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