Transcript: Human NM_201592.2

Homo sapiens glycoprotein M6A (GPM6A), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
GPM6A (2823)
Length:
3156
CDS:
380..1183

Additional Resources:

NCBI RefSeq record:
NM_201592.2
NBCI Gene record:
GPM6A (2823)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_201592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000117243 GCGTTCTTTGTGTATGGCATT pLKO.1 617 CDS 100% 4.050 5.670 N GPM6A n/a
2 TRCN0000310626 GCGTTCTTTGTGTATGGCATT pLKO_005 617 CDS 100% 4.050 5.670 N GPM6A n/a
3 TRCN0000117242 CCCTCAGATTACTCATGTTTA pLKO.1 1844 3UTR 100% 13.200 10.560 N GPM6A n/a
4 TRCN0000300435 CCCTCAGATTACTCATGTTTA pLKO_005 1844 3UTR 100% 13.200 10.560 N GPM6A n/a
5 TRCN0000117244 GCCAGTTTACATGTACTTCAA pLKO.1 796 CDS 100% 4.950 3.465 N GPM6A n/a
6 TRCN0000117246 GCAGCAGTCATTGCTATGGTT pLKO.1 1013 CDS 100% 3.000 2.100 N GPM6A n/a
7 TRCN0000310628 GCAGCAGTCATTGCTATGGTT pLKO_005 1013 CDS 100% 3.000 2.100 N GPM6A n/a
8 TRCN0000117245 CCAGTTTACATGTACTTCAAT pLKO.1 797 CDS 100% 5.625 3.375 N GPM6A n/a
9 TRCN0000300436 CCAGTTTACATGTACTTCAAT pLKO_005 797 CDS 100% 5.625 3.375 N GPM6A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_201592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00667 pDONR223 100% 95.8% 95.6% None 0_1ins33;2_3delTGinsAA n/a
2 ccsbBroad304_00667 pLX_304 0% 95.8% 95.6% V5 0_1ins33;2_3delTGinsAA n/a
3 TRCN0000480892 TGCCGTTGGGGGCACTTGTAAGAC pLX_317 50% 95.8% 95.6% V5 0_1ins33;2_3delTGinsAA n/a
4 ccsbBroadEn_06306 pDONR223 100% 95.6% 95.3% None 0_1ins33;2_3delTGinsAA;661C>A n/a
5 ccsbBroad304_06306 pLX_304 0% 95.6% 95.3% V5 0_1ins33;2_3delTGinsAA;661C>A n/a
6 TRCN0000467688 TTCCTTCCTGGTTCATGCAGAGAT pLX_317 51.1% 95.6% 95.3% V5 0_1ins33;2_3delTGinsAA;661C>A n/a
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