Transcript: Human NR_002836.2

Homo sapiens phosphoglucomutase 5 pseudogene 2 (PGM5P2), non-coding RNA.

Source:
NCBI, updated 2018-04-06
Taxon:
Homo sapiens (human)
Gene:
PGM5P2 (595135)
Length:
1976
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_002836.2
NBCI Gene record:
PGM5P2 (595135)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_002836.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049098 ACAGAGAGACATCTGGTGATA pLKO.1 1217 3UTR 100% 4.950 3.465 N PGM5P1 n/a
2 TRCN0000049100 CATCTGGTGATACTATCTGTT pLKO.1 1226 3UTR 100% 4.950 3.465 N PGM5P1 n/a
3 TRCN0000049099 CCCAGCCAATTCTGCAATAAA pLKO.1 921 3UTR 100% 15.000 7.500 Y PGM5P1 n/a
4 TRCN0000049102 CCTCTCTTGCATTCCATATTT pLKO.1 1140 3UTR 100% 15.000 7.500 Y PGM5P1 n/a
5 TRCN0000049101 CCTGACCCAAACCTGACATAT pLKO.1 976 3UTR 100% 13.200 6.600 Y PGM5P1 n/a
6 TRCN0000200822 GTGAAGTTTAATGTTGCCAAT pLKO.1 577 3UTR 100% 4.050 2.025 Y Pgm5 n/a
7 TRCN0000413827 GCAACTACCTGCCCAACTTCA pLKO_005 290 3UTR 100% 4.950 2.475 Y Pgm5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_002836.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13919 pDONR223 100% 47.6% None (many diffs) n/a
2 ccsbBroad304_13919 pLX_304 0% 47.6% V5 (many diffs) n/a
3 TRCN0000475957 AAGTCTTGGATCATGTTCTGTATA pLX_317 30.8% 47.6% V5 (many diffs) n/a
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