Transcript: Human NR_024204.2

Homo sapiens cytoskeleton regulator RNA (CYTOR), transcript variant 1, long non-coding RNA.

Source:
NCBI, updated 2019-08-13
Taxon:
Homo sapiens (human)
Gene:
CYTOR (112597)
Length:
852
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_024204.2
NBCI Gene record:
CYTOR (112597)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_024204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122588 CACAGCCGGAATGCAGCTGAA pLKO.1 640 3UTR 100% 1.350 0.675 Y CYTOR n/a
2 TRCN0000122556 CCACTGTGGACTCTGAGGCCT pLKO.1 689 3UTR 100% 0.000 0.000 Y CYTOR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_024204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10283 pDONR223 100% 18.3% None 1_577del;734_852del n/a
2 ccsbBroad304_10283 pLX_304 0% 18.3% V5 1_577del;734_852del n/a
3 TRCN0000470259 CCCAAGGGCGGGGCAATCCAGTCG pLX_317 100% 18.3% V5 1_577del;734_852del n/a
4 ccsbBroadEn_10395 pDONR223 100% 17.9% None (many diffs) n/a
5 ccsbBroad304_10395 pLX_304 0% 17.9% V5 (many diffs) n/a
6 TRCN0000467696 TATCCCCCCTGGAGTCGCAGTCCT pLX_317 100% 17.9% V5 (many diffs) n/a
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