Transcript: Human NR_036541.1

Homo sapiens G protein-coupled receptor 89A (GPR89A), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2018-12-04
Taxon:
Homo sapiens (human)
Gene:
GPR89A (653519)
Length:
2004
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_036541.1
NBCI Gene record:
GPR89A (653519)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_036541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244549 CTTCATTCTTGTTGGAATAAT pLKO_005 1226 3UTR 100% 15.000 7.500 Y GPR89B n/a
2 TRCN0000243822 GAATAGCAGCTCCCGTTATTT pLKO_005 372 3UTR 100% 15.000 7.500 Y GPR89A n/a
3 TRCN0000244548 TTCATGGCTACCATCAATATT pLKO_005 1098 3UTR 100% 15.000 7.500 Y GPR89B n/a
4 TRCN0000243824 ATGTGACTGACACGGATATTC pLKO_005 733 3UTR 100% 13.200 6.600 Y GPR89A n/a
5 TRCN0000358298 ATTACCTCCCAGATACTATTT pLKO_005 205 3UTR 100% 13.200 6.600 Y GPR89B n/a
6 TRCN0000014506 CCTGCTATTAGCACAGATAAT pLKO.1 1334 3UTR 100% 13.200 6.600 Y GPR89B n/a
7 TRCN0000014504 CCTTCATTCTTGTTGGAATAA pLKO.1 1225 3UTR 100% 13.200 6.600 Y GPR89B n/a
8 TRCN0000243823 GATTACCTCCCAGATACTATT pLKO_005 204 3UTR 100% 13.200 6.600 Y GPR89A n/a
9 TRCN0000244550 TCTGGAAACAGCTGATCTATA pLKO_005 980 3UTR 100% 13.200 6.600 Y GPR89B n/a
10 TRCN0000363142 TGAATAGCAGCTCCCGTTATT pLKO_005 371 3UTR 100% 13.200 6.600 Y GPR89B n/a
11 TRCN0000243825 TGGAACCAGGGCCTGACATTT pLKO_005 1630 3UTR 100% 13.200 6.600 Y GPR89A n/a
12 TRCN0000244551 TTAGAATACCGCACCATAATC pLKO_005 1404 3UTR 100% 13.200 6.600 Y GPR89B n/a
13 TRCN0000243821 ACTATGAGATACGTCAGTATG pLKO_005 269 3UTR 100% 10.800 5.400 Y GPR89A n/a
14 TRCN0000244552 TGAGCCAAACACGTAGGATTT pLKO_005 1892 3UTR 100% 10.800 5.400 Y GPR89B n/a
15 TRCN0000014505 CGCCAATTGTTTAAAGACTAT pLKO.1 253 3UTR 100% 4.950 2.475 Y GPR89B n/a
16 TRCN0000014507 CGCTCTCTCTAGCATACTCTT pLKO.1 1493 3UTR 100% 4.950 2.475 Y GPR89B n/a
17 TRCN0000014503 GCCAAGAAACTAAAGGTGAAA pLKO.1 1831 3UTR 100% 4.950 2.475 Y GPR89B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_036541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489448 TTCGCTAATGTGAAGCACCGCCCG pLX_317 23.4% 68.1% V5 1_174del;488_507del;1560_2004delinsG n/a
2 ccsbBroadEn_14517 pDONR223 100% 68% None (many diffs) n/a
3 ccsbBroad304_14517 pLX_304 0% 68% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000479192 GTTGGTCCATCTGCCGAGCCGACT pLX_317 29.6% 68% V5 (not translated due to prior stop codon) (many diffs) n/a
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