Transcript: Human NR_046406.1

Homo sapiens thioredoxin domain containing 12 (TXNDC12), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-29
Taxon:
Homo sapiens (human)
Gene:
TXNDC12 (51060)
Length:
3065
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046406.1
NBCI Gene record:
TXNDC12 (51060)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046406.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064391 CTCCTCGTCATCTCTTCTGAT pLKO.1 1130 3UTR 100% 4.950 3.465 N TXNDC12 n/a
2 TRCN0000430386 CAGCATAAGTTCAGACTAAAG pLKO_005 2636 3UTR 100% 10.800 5.400 Y KTI12 n/a
3 TRCN0000437258 CCACAGAGCACTTGCGGTTTA pLKO_005 2308 3UTR 100% 10.800 5.400 Y KTI12 n/a
4 TRCN0000414573 GGACAGGGATTACCTAGATTG pLKO_005 2715 3UTR 100% 10.800 5.400 Y KTI12 n/a
5 TRCN0000436945 AGCTCTTGTGACTCCGGATTC pLKO_005 1955 3UTR 100% 6.000 3.000 Y KTI12 n/a
6 TRCN0000146394 CAACTGGCCAACATGTTTCTT pLKO.1 2418 3UTR 100% 5.625 2.813 Y KTI12 n/a
7 TRCN0000148096 GACTCGCTTAACTACATCAAA pLKO.1 1635 3UTR 100% 5.625 2.813 Y KTI12 n/a
8 TRCN0000099046 GCCAACATGTTTCTTCAGTAT pLKO.1 2424 3UTR 100% 4.950 2.475 Y Kti12 n/a
9 TRCN0000147263 GCCAACATGTTTCTTCAGTAT pLKO.1 2424 3UTR 100% 4.950 2.475 Y KTI12 n/a
10 TRCN0000287891 GCCAACATGTTTCTTCAGTAT pLKO_005 2424 3UTR 100% 4.950 2.475 Y Kti12 n/a
11 TRCN0000150171 CTACATCAAAGGTTTCCGTTA pLKO.1 1646 3UTR 100% 4.050 2.025 Y KTI12 n/a
12 TRCN0000149209 GTCGCCAGTTTATTTCGTACA pLKO.1 2365 3UTR 100% 4.050 2.025 Y KTI12 n/a
13 TRCN0000149188 CGGACTCTGTAGTAAATGGAA pLKO.1 1873 3UTR 100% 3.000 1.500 Y KTI12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046406.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04637 pDONR223 100% 34.6% None 1_1400del;2463_3065del n/a
2 ccsbBroad304_04637 pLX_304 0% 34.6% V5 1_1400del;2463_3065del n/a
3 TRCN0000465859 CCTGATTCTTCAATATCCATGTAT pLX_317 25.4% 34.6% V5 1_1400del;2463_3065del n/a
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