Transcript: Human NR_046443.2

Homo sapiens centrosomal protein 41 (CEP41), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
CEP41 (95681)
Length:
6216
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046443.2
NBCI Gene record:
CEP41 (95681)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046443.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216193 CAACGTACACATAGCTTTAAT pLKO.1 2738 3UTR 100% 15.000 21.000 N Cep41 n/a
2 TRCN0000145058 CCAAGATACCAGCATATCAAA pLKO.1 111 3UTR 100% 5.625 7.875 N CEP41 n/a
3 TRCN0000143499 GCTTACAGTTACCCAATTGCA pLKO.1 548 3UTR 100% 3.000 4.200 N CEP41 n/a
4 TRCN0000144293 CCATGTTAGATGGACAGAAAT pLKO.1 1930 3UTR 100% 13.200 10.560 N CEP41 n/a
5 TRCN0000142809 CCCTACCAGCTGAGAATAAAT pLKO.1 852 3UTR 100% 15.000 10.500 N CEP41 n/a
6 TRCN0000121830 GAACAATGAACCCTTATTCAA pLKO.1 579 3UTR 100% 5.625 3.938 N CEP41 n/a
7 TRCN0000139119 CAGGACCAATGGGAAAGGAAA pLKO.1 371 3UTR 100% 4.950 3.465 N CEP41 n/a
8 TRCN0000143244 GCGTGATAGAGATTCTTACCA pLKO.1 508 3UTR 100% 3.000 2.100 N CEP41 n/a
9 TRCN0000140855 CGGAAGGACTGATTACTGGTT pLKO.1 759 3UTR 100% 2.640 1.848 N CEP41 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046443.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13007 pDONR223 100% 13.1% None (many diffs) n/a
2 ccsbBroad304_13007 pLX_304 0% 13.1% V5 (many diffs) n/a
3 TRCN0000480131 CCTTCTGCGCGAGTCCACAGGTCC pLX_317 42.5% 13.1% V5 (many diffs) n/a
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