Transcript: Human NR_046479.2

Homo sapiens FKBP prolyl isomerase 14 (FKBP14), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
FKBP14 (55033)
Length:
4826
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046479.2
NBCI Gene record:
FKBP14 (55033)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046479.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055898 CCCAGAAAGTACACTGATATT pLKO.1 402 3UTR 100% 13.200 9.240 N FKBP14 n/a
2 TRCN0000307722 CCCAGAAAGTACACTGATATT pLKO_005 402 3UTR 100% 13.200 9.240 N FKBP14 n/a
3 TRCN0000055900 CTCTCTAAAGATGAGGTTAAA pLKO.1 505 3UTR 100% 13.200 9.240 N FKBP14 n/a
4 TRCN0000291532 CTCTCTAAAGATGAGGTTAAA pLKO_005 505 3UTR 100% 13.200 9.240 N FKBP14 n/a
5 TRCN0000055901 GATCTTAATGATGACTGGAAA pLKO.1 484 3UTR 100% 4.950 3.465 N FKBP14 n/a
6 TRCN0000055899 GCGGTGGTGAATGAAAGTCAT pLKO.1 559 3UTR 100% 4.950 3.465 N FKBP14 n/a
7 TRCN0000291586 GCGGTGGTGAATGAAAGTCAT pLKO_005 559 3UTR 100% 4.950 3.465 N FKBP14 n/a
8 TRCN0000055902 GCCATTCATCTGCCATCGCAA pLKO.1 296 3UTR 100% 2.640 1.584 N FKBP14 n/a
9 TRCN0000307720 GCCATTCATCTGCCATCGCAA pLKO_005 296 3UTR 100% 2.640 1.584 N FKBP14 n/a
10 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4258 3UTR 100% 10.800 5.400 Y SMIM11A n/a
11 TRCN0000138391 CGCCTGTAATCCTAGCACTTT pLKO.1 3574 3UTR 100% 4.950 2.475 Y DENND6A n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1271 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046479.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03510 pDONR223 100% 9.6% None 1_194del;391_392ins152;676_4826del n/a
2 ccsbBroad304_03510 pLX_304 0% 9.6% V5 1_194del;391_392ins152;676_4826del n/a
3 TRCN0000470365 GCTAATTGACTTTGCAATCGACCT pLX_317 75.6% 9.6% V5 1_194del;391_392ins152;676_4826del n/a
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