Transcript: Human NR_104229.1

Homo sapiens NME/NM23 family member 7 (NME7), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2018-05-10
Taxon:
Homo sapiens (human)
Gene:
NME7 (29922)
Length:
1719
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104229.1
NBCI Gene record:
NME7 (29922)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104229.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000010222 GGATCAATATACAGCTCGCCA pLKO.1 490 3UTR 100% 0.660 0.924 N NME7 n/a
2 TRCN0000342536 GGATCAATATACAGCTCGCCA pLKO_005 490 3UTR 100% 0.660 0.924 N NME7 n/a
3 TRCN0000010221 GCTTCACTTCTTCGACGTTAT pLKO.1 305 3UTR 100% 10.800 7.560 N NME7 n/a
4 TRCN0000342476 GCTTCACTTCTTCGACGTTAT pLKO_005 305 3UTR 100% 10.800 7.560 N NME7 n/a
5 TRCN0000010223 GATGCTATATGTGAATGGAAA pLKO.1 752 3UTR 100% 4.950 3.465 N NME7 n/a
6 TRCN0000342478 GATGCTATATGTGAATGGAAA pLKO_005 752 3UTR 100% 4.950 3.465 N NME7 n/a
7 TRCN0000010225 GATCGGGTTAATGTTGAGGAA pLKO.1 1082 3UTR 100% 2.640 1.848 N NME7 n/a
8 TRCN0000010224 CTGAAAGCATTAGAGCCCTCT pLKO.1 819 3UTR 100% 2.160 1.512 N NME7 n/a
9 TRCN0000342538 CTGAAAGCATTAGAGCCCTCT pLKO_005 819 3UTR 100% 2.160 1.512 N NME7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104229.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491534 GGAAATTTTTCTTCTCAGCGAGCA pLX_317 28.9% 65.6% V5 1_253del;1244_1306del;1445_1719delinsG n/a
2 TRCN0000492222 TCGCCAAGGAAAGCTCCCAACTTA pLX_317 40.7% 65.5% V5 (not translated due to prior stop codon) (many diffs) n/a
3 ccsbBroadEn_15052 pDONR223 0% 65.5% None (many diffs) n/a
4 ccsbBroad304_15052 pLX_304 45.1% 65.5% V5 (many diffs) n/a
5 TRCN0000481255 ACTCATTCTGAACGTGCAGCACGG pLX_317 36.6% 65.5% V5 (many diffs) n/a
6 TRCN0000489327 CGATATTTAACATCTACACACTGA pLX_317 29.2% 65.5% V5 (not translated due to prior stop codon) (many diffs) n/a
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