Transcript: Human NR_146860.2

Homo sapiens chromosome 6 open reading frame 141 (C6orf141), transcript variant 9, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
C6orf141 (135398)
Length:
2394
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_146860.2
NBCI Gene record:
C6orf141 (135398)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_146860.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000323217 CCAACTACCCTTCTGTCTTTC pLKO_005 508 3UTR 100% 10.800 15.120 N C6orf141 n/a
2 TRCN0000323215 GAGCTCCAACCTGCAATTAAC pLKO_005 929 3UTR 100% 13.200 9.240 N C6orf141 n/a
3 TRCN0000323216 TCGAGGAAATTAAACTCTAAT pLKO_005 841 3UTR 100% 13.200 9.240 N C6orf141 n/a
4 TRCN0000350752 TTGTGCGGGTGGAGGATTATC pLKO_005 601 3UTR 100% 13.200 9.240 N C6orf141 n/a
5 TRCN0000172997 CCCAACTACCCTTCTGTCTTT pLKO.1 507 3UTR 100% 4.950 3.465 N C6orf141 n/a
6 TRCN0000167866 GATTATCAGGTAACACAAGAA pLKO.1 615 3UTR 100% 4.950 3.465 N C6orf141 n/a
7 TRCN0000323147 CGAATTTCTGGCAGGCGTGTA pLKO_005 540 3UTR 100% 4.050 2.835 N C6orf141 n/a
8 TRCN0000172977 GAAAGTGCTCTTTCTCCTGCA pLKO.1 386 3UTR 100% 0.216 0.151 N C6orf141 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_146860.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13184 pDONR223 100% 29.6% None 1_146del;534C>G;858_2394del n/a
2 ccsbBroad304_13184 pLX_304 0% 29.6% V5 1_146del;534C>G;858_2394del n/a
3 TRCN0000473035 AGCTCCAAGCTTGAGGCGCTTCGT pLX_317 18.6% 29.6% V5 1_146del;534C>G;858_2394del n/a
Download CSV