Construct: ORF TRCN0000473035
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000960.1_s317c1
- Derived from:
- ccsbBroadEn_13184
- DNA Barcode:
- AGCTCCAAGCTTGAGGCGCTTCGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C6orf141 (135398)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473035
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NM_001145652.2 | 96.9% | 96.7% | 1_21del;409C>G |
| 2 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_005248850.3 | 96.9% | 96.7% | 1_21del;409C>G |
| 3 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_005248852.2 | 96.9% | 96.7% | 1_21del;409C>G |
| 4 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_005248853.2 | 96.9% | 96.7% | 1_21del;409C>G |
| 5 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_006714997.2 | 96.9% | 96.7% | 1_21del;409C>G |
| 6 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_017010296.1 | 96.9% | 96.7% | 1_21del;409C>G |
| 7 | human | 135398 | C6orf141 | chromosome 6 open reading f... | XM_017010298.1 | 96.9% | 96.7% | 1_21del;409C>G |
| 8 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146859.2 | 44.2% | 1_146del;534C>G;858_1605del | |
| 9 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146855.2 | 42% | 1_146del;534C>G;858_1690del | |
| 10 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146856.2 | 38.7% | 1_146del;534C>G;858_1833del | |
| 11 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146864.2 | 33.9% | 1_146del;534C>G;858_2089del | |
| 12 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146862.2 | 32.4% | 1_146del;534C>G;858_2189del | |
| 13 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146858.2 | 31.1% | 1_146del;534C>G;858_2280del | |
| 14 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146853.2 | 29.8% | 1_146del;534C>G;858_2380del | |
| 15 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146860.2 | 29.6% | 1_146del;534C>G;858_2394del | |
| 16 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146854.2 | 29.3% | 1_146del;534C>G;858_2420del | |
| 17 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146863.2 | 27.4% | 1_146del;534C>G;858_2585del | |
| 18 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146857.2 | 27% | 1_146del;534C>G;858_2625del | |
| 19 | human | 135398 | C6orf141 | chromosome 6 open reading f... | NR_146861.2 | 25.2% | 1_146del;534C>G;858_2816del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 777
- ORF length:
- 711
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga gacccggggg cctcagggag ctgcgaatcc catggactcc tcccgcagcc 121 tgggggacct cgggcctttt ccgcgggagg tagggcgcgg ggctccgcta gctccgggcg 181 cccggaatcc cgcgacggca ggggcgagcc gaagccaggg cggcggccac gaggacagaa 241 cggcagatcg ggccctcgga cctcgggccg gggaggaatt ggaccgtgag tcctgggtca 301 gagagaaagt gctctttctc ctgcacccag agaggtggtt agggactcga ggggaccctg 361 cacgggaaga ggtggccggt gcagaggacc ttcctcatgc gggtggagag gaccacggcg 421 aggagcccaa ctacccttct gtctttcaac gagaaaagcg aatttctggc aggcgtgtag 481 ccccgccgcg ggacgcagca gacccaccca aatacgtgct tgtgcgggtg gaggattatc 541 aggtaacaca agaagtgttg cagacctcct gggccaaggg tcgcatgacc acgaggactg 601 aggagcactt cgtgaccgcg ctcacttttc gcagcagtag agagggacag cCTGGGGAAC 661 GCTGGGGCCC TGCTGAATCC CGGGCTCTCC AGGCACGAAC AGGGGCATCC CGCGTCCACG 721 CCGCGGGGAG GAGGGTTTCA CCGTCTCCAG GGACTTGGCT CGAGGAAATT AAACTCTACC 781 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 841 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 901 ATATATCTTG TGGAAAGGAC GAAGCTCCAA GCTTGAGGCG CTTCGTACGC GTTAAGTCga 961 caatcaacct ctggattaca aaatttgtga aagatt