Construct: ORF TRCN0000473035

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000960.1_s317c1
Derived from:
ccsbBroadEn_13184
DNA Barcode:
AGCTCCAAGCTTGAGGCGCTTCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C6orf141 (135398)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473035
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 135398 C6orf141 chromosome 6 open reading f... NM_001145652.2 96.9% 96.7% 1_21del;409C>G
2 human 135398 C6orf141 chromosome 6 open reading f... XM_005248850.3 96.9% 96.7% 1_21del;409C>G
3 human 135398 C6orf141 chromosome 6 open reading f... XM_005248852.2 96.9% 96.7% 1_21del;409C>G
4 human 135398 C6orf141 chromosome 6 open reading f... XM_005248853.2 96.9% 96.7% 1_21del;409C>G
5 human 135398 C6orf141 chromosome 6 open reading f... XM_006714997.2 96.9% 96.7% 1_21del;409C>G
6 human 135398 C6orf141 chromosome 6 open reading f... XM_017010296.1 96.9% 96.7% 1_21del;409C>G
7 human 135398 C6orf141 chromosome 6 open reading f... XM_017010298.1 96.9% 96.7% 1_21del;409C>G
8 human 135398 C6orf141 chromosome 6 open reading f... NR_146859.2 44.2% 1_146del;534C>G;858_1605del
9 human 135398 C6orf141 chromosome 6 open reading f... NR_146855.2 42% 1_146del;534C>G;858_1690del
10 human 135398 C6orf141 chromosome 6 open reading f... NR_146856.2 38.7% 1_146del;534C>G;858_1833del
11 human 135398 C6orf141 chromosome 6 open reading f... NR_146864.2 33.9% 1_146del;534C>G;858_2089del
12 human 135398 C6orf141 chromosome 6 open reading f... NR_146862.2 32.4% 1_146del;534C>G;858_2189del
13 human 135398 C6orf141 chromosome 6 open reading f... NR_146858.2 31.1% 1_146del;534C>G;858_2280del
14 human 135398 C6orf141 chromosome 6 open reading f... NR_146853.2 29.8% 1_146del;534C>G;858_2380del
15 human 135398 C6orf141 chromosome 6 open reading f... NR_146860.2 29.6% 1_146del;534C>G;858_2394del
16 human 135398 C6orf141 chromosome 6 open reading f... NR_146854.2 29.3% 1_146del;534C>G;858_2420del
17 human 135398 C6orf141 chromosome 6 open reading f... NR_146863.2 27.4% 1_146del;534C>G;858_2585del
18 human 135398 C6orf141 chromosome 6 open reading f... NR_146857.2 27% 1_146del;534C>G;858_2625del
19 human 135398 C6orf141 chromosome 6 open reading f... NR_146861.2 25.2% 1_146del;534C>G;858_2816del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
777
ORF length:
711
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gacccggggg cctcagggag ctgcgaatcc catggactcc tcccgcagcc
121tgggggacct cgggcctttt ccgcgggagg tagggcgcgg ggctccgcta gctccgggcg
181cccggaatcc cgcgacggca ggggcgagcc gaagccaggg cggcggccac gaggacagaa
241cggcagatcg ggccctcgga cctcgggccg gggaggaatt ggaccgtgag tcctgggtca
301gagagaaagt gctctttctc ctgcacccag agaggtggtt agggactcga ggggaccctg
361cacgggaaga ggtggccggt gcagaggacc ttcctcatgc gggtggagag gaccacggcg
421aggagcccaa ctacccttct gtctttcaac gagaaaagcg aatttctggc aggcgtgtag
481ccccgccgcg ggacgcagca gacccaccca aatacgtgct tgtgcgggtg gaggattatc
541aggtaacaca agaagtgttg cagacctcct gggccaaggg tcgcatgacc acgaggactg
601aggagcactt cgtgaccgcg ctcacttttc gcagcagtag agagggacag cCTGGGGAAC
661GCTGGGGCCC TGCTGAATCC CGGGCTCTCC AGGCACGAAC AGGGGCATCC CGCGTCCACG
721CCGCGGGGAG GAGGGTTTCA CCGTCTCCAG GGACTTGGCT CGAGGAAATT AAACTCTACC
781CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
841TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
901ATATATCTTG TGGAAAGGAC GAAGCTCCAA GCTTGAGGCG CTTCGTACGC GTTAAGTCga
961caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)