Transcript: Human NR_153323.1

Homo sapiens exo/endonuclease G (EXOG), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2018-12-02
Taxon:
Homo sapiens (human)
Gene:
EXOG (9941)
Length:
3619
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_153323.1
NBCI Gene record:
EXOG (9941)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_153323.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049857 CTTTGACCTTACCTCAGACTA pLKO.1 689 3UTR 100% 4.950 6.930 N EXOG n/a
2 TRCN0000049854 GCCTTCAATGAAGATTATGTT pLKO.1 472 3UTR 100% 5.625 4.500 N EXOG n/a
3 TRCN0000431790 GATGGGTTCTTGAACATATTT pLKO_005 371 3UTR 100% 15.000 10.500 N EXOG n/a
4 TRCN0000431618 GCCCTCTTTAGGCTAACATAT pLKO_005 1722 3UTR 100% 13.200 9.240 N EXOG n/a
5 TRCN0000431664 TTTAAGCCTGATCCCAATATC pLKO_005 436 3UTR 100% 13.200 9.240 N EXOG n/a
6 TRCN0000425108 TATTGGAACAGAATAGAAATG pLKO_005 616 3UTR 100% 10.800 7.560 N EXOG n/a
7 TRCN0000049855 CCAGGAGTTCACCTTGTACTT pLKO.1 1481 3UTR 100% 4.950 3.465 N EXOG n/a
8 TRCN0000049853 GCAGAGATTGAACCAGATGAT pLKO.1 1572 3UTR 100% 4.950 3.465 N EXOG n/a
9 TRCN0000049856 GCTAGAAGAACTCAAAGCTAA pLKO.1 1619 3UTR 100% 4.950 3.465 N EXOG n/a
10 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 1157 3UTR 100% 4.950 2.475 Y LOC387873 n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1194 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1194 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_153323.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11435 pDONR223 100% 18.9% None 1_516del;739_1211del;1674_3619del n/a
2 ccsbBroad304_11435 pLX_304 0% 18.9% V5 1_516del;739_1211del;1674_3619del n/a
3 TRCN0000468541 GTACTCTCGCCCATACTTCCATAC pLX_317 60.1% 18.9% V5 1_516del;739_1211del;1674_3619del n/a
4 ccsbBroadEn_11616 pDONR223 100% 4.7% None (many diffs) n/a
5 ccsbBroad304_11616 pLX_304 0% 4.7% V5 (many diffs) n/a
6 TRCN0000467678 CCTCCCCTCACACCTCGTCAAAAC pLX_317 100% 4.7% V5 (many diffs) n/a
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