Construct: ORF TRCN0000468541

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009524.1_s317c1
Derived from:
ccsbBroadEn_11435
DNA Barcode:
GTACTCTCGCCCATACTTCCATAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EXOG (9941)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468541
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9941 EXOG exo/endonuclease G XM_017007584.1 100% 100%
2 human 9941 EXOG exo/endonuclease G XM_017007585.1 100% 100%
3 human 9941 EXOG exo/endonuclease G XM_017007586.1 100% 100%
4 human 9941 EXOG exo/endonuclease G XM_017007587.1 100% 100%
5 human 9941 EXOG exo/endonuclease G XM_017007588.1 100% 100%
6 human 9941 EXOG exo/endonuclease G XM_017007589.1 100% 100%
7 human 9941 EXOG exo/endonuclease G XM_017007590.1 100% 100%
8 human 9941 EXOG exo/endonuclease G XM_017007591.1 100% 100%
9 human 9941 EXOG exo/endonuclease G XM_017007592.1 100% 100%
10 human 9941 EXOG exo/endonuclease G XM_017007593.1 100% 100%
11 human 9941 EXOG exo/endonuclease G XM_024453847.1 100% 100%
12 human 9941 EXOG exo/endonuclease G XM_024453848.1 100% 100%
13 human 9941 EXOG exo/endonuclease G XM_024453849.1 100% 100%
14 human 9941 EXOG exo/endonuclease G XM_006713442.3 86% 86% 1_111del
15 human 9941 EXOG exo/endonuclease G XM_017007594.2 76.5% 69.4% (many diffs)
16 human 9941 EXOG exo/endonuclease G NM_001145464.1 71.6% 71.6% 1_270del
17 human 9941 EXOG exo/endonuclease G NM_005107.4 61.9% 61.9% 1_420del
18 human 9941 EXOG exo/endonuclease G XR_940529.3 33.6% 1_465del;691_809del;1269_2034del
19 human 9941 EXOG exo/endonuclease G XR_940530.3 31.8% 1_465del;691_925del;1385_2150del
20 human 9941 EXOG exo/endonuclease G XR_940528.1 24.7% 1_465del;691_806del;894_895ins371
21 human 9941 EXOG exo/endonuclease G NR_134938.2 23.5% 1_354del;580_698del;1158_2906del
22 human 9941 EXOG exo/endonuclease G NR_153322.1 22.4% 1_422del;1107_3052del
23 human 9941 EXOG exo/endonuclease G NR_153324.1 22.3% 1_427del;1112_3057del
24 human 9941 EXOG exo/endonuclease G XM_005265635.3 22.2% 20.9% (many diffs)
25 human 9941 EXOG exo/endonuclease G NR_153325.1 21.9% 1_486del;1171_3116del
26 human 9941 EXOG exo/endonuclease G NR_153327.1 21.2% 1_583del;1268_3213del
27 human 9941 EXOG exo/endonuclease G NR_153326.1 21.2% 1_584del;1269_3214del
28 human 9941 EXOG exo/endonuclease G NR_153329.1 20.9% 1_640del;1325_3270del
29 human 9941 EXOG exo/endonuclease G NR_153330.1 20.6% 1_678del;1363_3308del
30 human 9941 EXOG exo/endonuclease G NR_153328.1 20.4% 1_722del;1407_3352del
31 human 9941 EXOG exo/endonuclease G NR_153323.1 18.9% 1_516del;739_1211del;1674_3619del
32 mouse 208194 Exog endo/exonuclease (5'-3'), e... XM_011242946.2 83.5% 85% (many diffs)
33 mouse 208194 Exog endo/exonuclease (5'-3'), e... XM_011242947.2 83.5% 85% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
753
ORF length:
684
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggctccagca ggaaataaca aattttcaag taaagccatg gctgaaacct
121tttacctttc taacattgtg cctcaggatt ttgataataa ttctggatat tggaacagaa
181tagaaatgta ctgtcgagag ctgacagaaa ggtttgaaga tgtttgggtg gtatctgggc
241ctttgacctt acctcagact agaggcgatg gaaagaaaat agttagttac caggtgattg
301gcgaggacaa cgtggcagtc ccctcacacc tttataagGT AATCCTGGCC CGCAGAAGCT
361CAGTATCTAC CGAACCACTG GCGCTAGGGG CCTTTGTGGT ACCCAATGAA GCCATCGGCT
421TCCAGCCCCA GTTAACTGAA TTCCAAGTGA GCCTCCAGGA CCTAGAGAAG TTGTCAGGAC
481TGGTGTTTTT TCCTCATTTG GATAGAACTA GTGATATCCG GAATATCTGC TCTGTGGACA
541CCTGTAAGCT CCTGGATTTC CAGGAGTTCA CCTTGTACTT GAGTACAAGA AAGATTGAAG
601GAGCCCGATC AGTGCTCAGA CTGGAAAAGA TCATGGAAAA CTTGAAGAAT GCAGAGATTG
661AACCAGATGA TTACTTTATG AGTCGCTATG AGAAGAAGCT AGAAGAACTC AAAGCTAAGG
721AGCAGTCAGG AACCCAGATA AGAAAGCCAT CCTTGCCAAC TTTCTTGTAC AAAGTGGTTG
781ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
841GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGAGT
901ACTCTCGCCC ATACTTCCAT ACACGCGTTA AGTCgacaat caacctctgg attacaaaat
961ttgtgaaaga tt

Download FASTA (ORF) (Full)