Transcript: Human NR_158960.1

Homo sapiens androgen induced 1 (AIG1), transcript variant 26, non-coding RNA.

Source:
NCBI, updated 2019-08-11
Taxon:
Homo sapiens (human)
Gene:
AIG1 (51390)
Length:
2449
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_158960.1
NBCI Gene record:
AIG1 (51390)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_158960.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000422793 CTAAACGCAAGAGCTAGATTG pLKO_005 1077 3UTR 100% 10.800 15.120 N AIG1 n/a
2 TRCN0000121552 CTGACGTTCATTGATCTGGTT pLKO.1 161 3UTR 100% 2.640 3.696 N AIG1 n/a
3 TRCN0000423496 ACGACGGTTCTGCCCTTTATA pLKO_005 440 3UTR 100% 15.000 12.000 N AIG1 n/a
4 TRCN0000422331 CAGTGTTCTGGATCATTTATG pLKO_005 345 3UTR 100% 13.200 9.240 N AIG1 n/a
5 TRCN0000122251 CCCAAAGTCATTACTGATAAT pLKO.1 1282 3UTR 100% 13.200 9.240 N AIG1 n/a
6 TRCN0000144770 CCTATGACAGAGAGATGATAT pLKO.1 366 3UTR 100% 13.200 9.240 N AIG1 n/a
7 TRCN0000255762 CTATGACAGAGAGATGATATA pLKO_005 367 3UTR 100% 13.200 9.240 N Aig1 n/a
8 TRCN0000438932 GGACATCGCACCATCAGTATC pLKO_005 474 3UTR 100% 10.800 7.560 N AIG1 n/a
9 TRCN0000140828 GATGGCAATCCTGCTGTCTTA pLKO.1 67 3UTR 100% 4.950 3.465 N AIG1 n/a
10 TRCN0000140597 GCTGGAAATTCCTGACGTTCA pLKO.1 150 3UTR 100% 4.050 2.835 N AIG1 n/a
11 TRCN0000142987 CAGAGAGATGATATACCCGAA pLKO.1 373 3UTR 100% 2.160 1.512 N AIG1 n/a
12 TRCN0000139226 CCTGTGTAACTACAAGGCCAT pLKO.1 97 3UTR 100% 2.160 1.512 N AIG1 n/a
13 TRCN0000139776 CTGGTTATCCAGGCTGTCTTT pLKO.1 176 3UTR 100% 4.950 2.970 N AIG1 n/a
14 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2110 3UTR 100% 5.625 2.813 Y KLHL30 n/a
15 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2110 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_158960.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03298 pDONR223 100% 28.7% None (many diffs) n/a
2 ccsbBroad304_03298 pLX_304 0% 28.7% V5 (many diffs) n/a
3 TRCN0000472812 GTGGTAAACTACAGTGAATACGAG pLX_317 45.7% 28.7% V5 (many diffs) n/a
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