Transcript: Human NR_159945.1

Homo sapiens von Willebrand factor C domain containing 2 like (VWC2L), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2018-11-21
Taxon:
Homo sapiens (human)
Gene:
VWC2L (402117)
Length:
4788
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_159945.1
NBCI Gene record:
VWC2L (402117)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_159945.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000255391 TTGCAGGAACGACGATAATTC pLKO_005 1496 3UTR 100% 13.200 18.480 N VWC2L n/a
2 TRCN0000255390 TACAAGTTGGGAGAACGATTT pLKO_005 994 3UTR 100% 10.800 15.120 N VWC2L n/a
3 TRCN0000281405 GGTGACCAGATCTCCAGTAAT pLKO_005 913 3UTR 100% 13.200 9.240 N VWC2L n/a
4 TRCN0000255392 GACCAACCAGAATGCCCTAAA pLKO_005 1069 3UTR 100% 10.800 7.560 N VWC2L n/a
5 TRCN0000255389 TTCACCCAAAGTGTACTAAAG pLKO_005 1091 3UTR 100% 10.800 7.560 N VWC2L n/a
6 TRCN0000177549 CAGTAATGACAATCTGATCTT pLKO.1 927 3UTR 100% 4.950 3.465 N Vwc2l n/a
7 TRCN0000177958 GAAGACTATCCTGCTGATGAA pLKO.1 892 3UTR 100% 4.950 3.465 N Vwc2l n/a
8 TRCN0000177868 CTTTGATGACTATCGAGGGAA pLKO.1 945 3UTR 100% 2.640 1.848 N Vwc2l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_159945.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05652 pDONR223 100% 13.9% None 1_813del;1332_1481del;1630_4788del n/a
2 ccsbBroad304_05652 pLX_304 0% 13.9% V5 1_813del;1332_1481del;1630_4788del n/a
3 TRCN0000475702 AACACTTCCATCGGCATTTGCATA pLX_317 51.8% 13.9% V5 1_813del;1332_1481del;1630_4788del n/a
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