Transcript: Mouse NM_001290549.1

Mus musculus endothelial-specific receptor tyrosine kinase (Tek), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Tek (21687)
Length:
4699
CDS:
353..3721

Additional Resources:

NCBI RefSeq record:
NM_001290549.1
NBCI Gene record:
Tek (21687)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001290549.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361555 TTGACTTGGCAACCGATATTT pLKO_005 2027 CDS 100% 15.000 21.000 N Tek n/a
2 TRCN0000023556 GCCTTTCAACATTTCCGTCAA pLKO.1 1657 CDS 100% 4.050 5.670 N Tek n/a
3 TRCN0000361553 TCCATCATCATCCGGTATAAG pLKO_005 2354 CDS 100% 13.200 10.560 N Tek n/a
4 TRCN0000023558 CGGTATAAGGTTCAGGGCAAA pLKO.1 2366 CDS 100% 4.050 3.240 N Tek n/a
5 TRCN0000361485 CATAAGATACTGTTCGTTAAA pLKO_005 4104 3UTR 100% 13.200 9.240 N Tek n/a
6 TRCN0000378503 CCGGCATGAAGTACCTGATAT pLKO_005 850 CDS 100% 13.200 9.240 N Tek n/a
7 TRCN0000023554 CGCATCAAGAAGGATGGGTTA pLKO.1 2870 CDS 100% 4.050 2.835 N Tek n/a
8 TRCN0000023557 GCCTTAATGAACCAGCACCAA pLKO.1 539 CDS 100% 2.640 1.848 N Tek n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001290549.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000491252 ACTCGGAAAATATGCCAGGCTATC pLX_317 23.4% 24.3% .2% V5 (not translated due to prior stop codon) (many diffs) n/a
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